Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02394 TCTCGGTTTAACTACATCAACGCCCACACCCTCCACGTGATTGCGGGACCCACAAAAAATAAAAAACCCTCGCTCTTCTGGCTTCGCTCTCTATCTTCATCCATGGCGGAACCGGAGCCTTCTCAGGCGCTGCTCCTCCGGAACCTTACCCGCGTCGCCACCCAAATCTCCAACCTCTTCGCCTTCAAGCCCGTTCTCAAGCCCCAATGCTGCGACCTCCGACGCAGAATAACGTTCCTCGCTCCGCTCTTCCACGACTTGCACCACCTCGACGTCGTTTCCACCCGCGCCGTTCCGTTAGACGCGTTCCATGATGCGCTCCTCTCCGCCCAGGAACTGCTCCAATTCGCCTCCTCTGCGTGCCAGATACTTGATAGAGAGCAAGTTAAGCACAATTTCGTTGATGTTGCTGTTCGTTTTGAACATGCTATAAACAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCACTTGTGATCACTCAGTTTAGAAGAGCCAAAGAGCAGTTTGATCCACCGGGTCTTAAGCTTTATGATCAACTGTTGTCTGTTTACAAGCAGAGCTATAATGTGAATACTGAAACTTCTGAACTACGTTTAATCTGTGAAAAACTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTACAAAAGATGGTTGTAGACATAGGTGGGCGTCGTCAGGAAAGCATATGGGATATGTCATTAGTAGTGCTGAAAAAAATCCAAGATTTCTTGGTGGTGGAATCTGGGAACAAGATTGTATCACCAAGTGAAGATTTTTCTCAACATACTGATGAATCTCATGTGAAACTATGTCCACAATCACTGGTTATACCTGACGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAATGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGCATAAAGAAATGGCTTGAAGCAAGGCATAGAACATGTCCCAAGACTCTGCAAATTCTTTCCACCCCCATCCTCGTACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGCGAGGCAAATGGAGTGGAACCTCCTAAAAGATTGGGAAATTTATGGGTTTGTAAGACAACATCAGATGGATCTTCTGAATTGATAGATCTTAGTGTTTTATTGAGAAAACTTTCTTCGAGTGATATTGGGGATCAACGATGTGCAGCAGGTGAGTTCCGACTTCTTGCCAAGCAAAATGGTGAAAATCGAATTCTGATTGCTGAAGCTGGTGCTATACCCCACCTTGTTTATCTCCTCTATGCACCTGATGCTAGCACCCAAGAACATGCAGTTACTGCTCTTCTGAACTTGTCCATCAATGTGAATAATAAGGAGCGCATTATGGCTTCTGAGGCTGTGCCAGGCATCCTCCACGTGCTTCAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCATCTGGAGCAATCAACGCATTAGTCACTCTATTCTGTGAGGGAAGTCAAAGAGGGAAGGTGGATGCTGCAAAAGCGCTATTTAATCTGTGTTTATCTCACAGGAACAAAGGACGGGCAATTAGGGCTGGTATTGTGCCCAAGTTGATAGAAATGCTAACAGAACATGATGGGGAGATGAGGGACGAGGCATTGGCCATAACGGCTGTAGTAGCTAGCCATCCTGATGGACAAGCAGCAATTAGATCTATGAATGTTGTTTCCACTTTGGTGGAATTAATCAATAATGGATCTCCTAAGAACAAAGAGAATTCAACTTCAGTGTTGGTTCTCCTCTGTAATGGAGATCCTCTACATTTGTCAATTGTCAGTTCACTTGGGGTGATCAATCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGAAAAGCTGCCCAGCTTCTTGGGTTGATAGGAAACCATTGTGAACATACTAGGAAAACTGTCAGCTAGGGTTTAGGTTTAAGCAACTGGTATAGATACTAGATACGTTTAAAGATATGATTTATATAATAGGTTATTATGGTATAGGATCCCCAAAATTTCCTTTTTAATTTTTAGTTTAAAGGAAATTTCCAGTTTACCCATCAATCATTTAGTTGAATTGAACCACTTCTGCTGTTAGCTAGTAGGAAGCGTTAAGGTGGCTGTTCAACACAGTTGAAATACAGATATTTGTTATTGGAAGGGGGAAAAATTGTATATTTTATCATCTCAAACTCCTACTGGCATTTCTCTTTTTGCAATGAAATGTCTTCAACTATTGTTTCAGTCTCACTTGTGATCAAGATTCTTGTCTTTCGG 2367 0.4343 SRFNYINAHTLHVIAGPTKNKKPSLFWLRSLSSSMAEPEPSQALLLRNLTRVATQISNLFAFKPVLKPQCCDLRRRITFLAPLFHDLHHLDVVSTRAVPLDAFHDALLSAQELLQFASSACQILDREQVKHNFVDVAVRFEHAINKISFDELDVSEEIKEQVALVITQFRRAKEQFDPPGLKLYDQLLSVYKQSYNVNTETSELRLICEKLQFINVDDVKQESLALQKMVVDIGGRRQESIWDMSLVVLKKIQDFLVVESGNKIVSPSEDFSQHTDESHVKLCPQSLVIPDEFRCPISLELMNDPVIICTGQTYERSCIKKWLEARHRTCPKTLQILSTPILVPNHALYGLISSWCEANGVEPPKRLGNLWVCKTTSDGSSELIDLSVLLRKLSSSDIGDQRCAAGEFRLLAKQNGENRILIAEAGAIPHLVYLLYAPDASTQEHAVTALLNLSINVNNKERIMASEAVPGILHVLQNGSMEARENAAATFFSLSGVDENRVAIGASGAINALVTLFCEGSQRGKVDAAKALFNLCLSHRNKGRAIRAGIVPKLIEMLTEHDGEMRDEALAITAVVASHPDGQAAIRSMNVVSTLVELINNGSPKNKENSTSVLVLLCNGDPLHLSIVSSLGVINPLLDLAENGSERGKRKAAQLLGLIGNHCEHTRKTVS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02394 671 PANTHER U BOX DOMAIN-CONTAINING 68 658 - -
Pste5g02394 671 FunFam RING-type E3 ubiquitin transferase 289 361 - -
Pste5g02394 671 Gene3D - 372 525 IPR011989 -
Pste5g02394 671 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Pste5g02394 671 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Pste5g02394 671 SUPERFAMILY ARM repeat 386 662 IPR016024 -
Pste5g02394 671 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Pste5g02394 671 Pfam Armadillo/beta-catenin-like repeat 417 454 IPR000225 GO:0005515
Pste5g02394 671 SUPERFAMILY RING/U-box 289 365 - -
Pste5g02394 671 CDD RING-Ubox_PUB 290 342 IPR045210 -
Pste5g02394 671 Gene3D - 526 670 IPR011989 -
Pste5g02394 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 362 IPR013083 -
Pste5g02394 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 497 537 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 621 661 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 456 496 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 579 619 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 415 455 IPR000225 GO:0005515
Pste5g02394 671 SMART arm_5 538 578 IPR000225 GO:0005515
Pste5g02394 671 FunFam RING-type E3 ubiquitin transferase 372 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02394 Pste-Chr5 16401536 16407337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02394 39 669 U-box Gene Family AT3G46510 47.253 0.0 570