Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02384 GACTCTGTAGCTAGCAATAGCATACATATTACATAGAAACACTCTCTCTCATTGTCATATCTTTGGTTTGCTAGGTCCATCAAGGAAGCAGTGATTCCCTCAGCTTCGACATCAAATGAAGCCATAATCATAATCATAAGGCCTCTTTCTCTTTCTCTCCTTCACAAATCCTCTCTCAATGTCGATAAACCACTACTCAGCAGAAAGGAGACTATACTTTAGCGAAGAAGAAGGCGCCACGTGGCTGCACACTCCCCGTTTCAACCTCAACGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGTTGTGGCCGTTGGAGGCGGCGCGCGAGAGGAGGAGAAGGAGGCGATGTTCGAGAAGCCGTTGACGCCGAGCGACGTCGGGAAGCTGAACAGGCTGGTGATTCCGAAACAGCACGCGGAGAAGCACTTCCCTCTTGACTCGTCGGGTGACACGGCGAAGGGGCTCTTGCTGAGTTTCGAGGACGAGTCAGGTAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGTTACGTGAAAGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTCCACAGACACCGCTCCCACCCTCAACGCTTCTTCATCACCTCCACCCGCCGCCACCTCCAACCCACCCCGCCCTCCCACGTTGCTACCCCTCCTTCTACTCCGCGCACCACCACCTCCCCTTCCCTTACTCCTTCCATGCACCTGCACCTGCACCTTCACCTTCACCTGCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCTTCACCAGGGGTTGAAATATATATATATATTGAAAATGGTGAATGGTGATAGTGGAGGGTCCCAGAGCGAAGGACAGAAGGAAACGACACCGGGTGGGAACAGTTCAAGTGGCAGGGTGCTGAGGCTGTTTGGGGTCAACATGGAATGCCAACCTGATCATCATTCCCAAAACTCCACACCACACTTATTCCTCCATCAACCACCTTCTTATTCTTCTTCAAACCCTCACCCTCACATGCTACCTCCACCACTCCCATAATACAATTACAATCTCTTTCTTTTATTTTTCTACCTTTCCTGCTTCAGGGTTACGCTATGCCCTTCATTTTTATTTTTTTCTAGTCAAGTCAATGACCGTCTCGTTAACATGAACCCGTGAAAGGAACCCTTCTTTTTATTAGGTTGACGTTGAGGATTGAAGATTATAGAGGATCTTTCTTGTCTTAAATTAGGGAGATGCATGCAAATGAAAATGCCTTGTTTATTGCTTTTTATCGAATCTTCTTGTTCCCTGTCGCTCCACCATATATATTAATTATCAACTCAACTCTCAAATGCCAG 1385 0.4881 MFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSGDTAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRSHPQRFFITSTRRHLQPTPPSHVATPPSTPRTTTSPSLTPSMHLHLHLHLHLHLHLHLHLHLHLHLHQGLKYIYILKMVNGDSGGSQSEGQKETTPGGNSSSGRVLRLFGVNMECQPDHHSQNSTPHLFLHQPPSYSSSNPHPHMLPPPLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02384 243 SUPERFAMILY DNA-binding pseudobarrel domain 1 101 IPR015300 -
Pste5g02384 243 ProSiteProfiles B3 DNA-binding domain profile. 2 104 IPR003340 GO:0003677
Pste5g02384 243 SMART B3_2 2 104 IPR003340 GO:0003677
Pste5g02384 243 MobiDBLite consensus disorder prediction 174 243 - -
Pste5g02384 243 MobiDBLite consensus disorder prediction 105 130 - -
Pste5g02384 243 Gene3D - 1 113 IPR015300 -
Pste5g02384 243 CDD B3_DNA 1 93 IPR003340 GO:0003677
Pste5g02384 243 MobiDBLite consensus disorder prediction 208 231 - -
Pste5g02384 243 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 217 IPR044800 GO:0003700
Pste5g02384 243 Pfam B3 DNA binding domain 2 96 IPR003340 GO:0003677
Pste5g02384 243 MobiDBLite consensus disorder prediction 174 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02384 Pste-Chr5 16224086 16225826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02384 1 232 RAV Transcription Factor Family AT5G06250 43.852 3.34e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g02384 B3 8.7e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02384 5 16224086 16225826 Pste5g02384 5 16224086 16225826 ECH