Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02375 TGTGAGGCCCGTTTACTCTGTGAAATGCAGGCAACATTGAGTCGTAACTATCCCTTTGTCCCTGCAACTGCAATACTGAGAAATGAATTCCATGGCGGCCGCGAGAAAAATAATTGAGGCCAATAAAAATAAAGCCTTGTGGTCGTCTCTTCTCTCTTTTCGCCGGGGAATTGCTTTTAAGCTTTTTGTTGGAGGACTGTCCTTTTACACCACAGAGAAAGGGTTGTCAGATGCGTTCTCCAATTATGGTCAAGTTATTGAAGCCAAAATTGCAACAGATAGGATGACAGACAGATCAAAGGGATTTGGGTTTGTCACCTTTGCTTCCCAAGACGAGGCTGAGAAAGCCATAGAAGAGATGAAAGGAAGGACATTAAATGGACGTGTTGTCTTTGTTGATTATGCAAAACCTAGTATCAACACTGGTGGTGGAATTCCTATTGCTAGAGGACCTCCTGAACCAAAAGCAGATGATTGATTTCCCTCTCAGAGCGTATGACATTAATGTTTAATATACTTGAGCAAGAGATATGTTACAAAATAGCATCAATCTTTCTTTCTTAGTTTTTTTAGGATTATATGCTTTATGCATACGATAATTTGAAGAATTGTTCACCACAAGTGATAGTTGAAGGATTAATGAATTGTACTATAGTACTTGGTATGGAGTATTTTGTGGAAGCTGAAATATATTAACTGTCTTACTAGGAATGTGGATTTTTGTGCCAAGAGCCAAAGATTGATATTTTGTACTAAATACATGGCCGAACCATTGGA 777 0.3874 MNSMAAARKIIEANKNKALWSSLLSFRRGIAFKLFVGGLSFYTTEKGLSDAFSNYGQVIEAKIATDRMTDRSKGFGFVTFASQDEAEKAIEEMKGRTLNGRVVFVDYAKPSINTGGGIPIARGPPEPKADD 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02375 131 SMART rrm1_1 33 106 IPR000504 GO:0003723
Pste5g02375 131 Gene3D - 26 126 IPR012677 -
Pste5g02375 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 102 IPR000504 GO:0003723
Pste5g02375 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Pste5g02375 131 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 112 - -
Pste5g02375 131 SUPERFAMILY RNA-binding domain, RBD 32 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02375 Pste-Chr5 16135653 16137041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02375 34 116 Eukaryotic Initiation Factors Gene Family AT4G34110 36.471 5.70e-12 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02375 5 16135653 16137041 Pste5g02375 5 16135653 16137041 ECH