Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02351 GTATCAAATATGGCAAATATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTCATTTCCTTCTATCTCCACAATAAGCTTGAAGGAATAAGGGAGGACATGAATCGAGTTATTCCAGTAGTTGATATATACGACTACAACCCATCCCAACTCCCACAAATTTCAGGAGAGGCGAGTCTGAAAGACACGGAACAATGGTTCTTCTTCATTCCGAGACAAGAGACTGAAGCTCGAGGAGGGAGACCAAAGCGTCTCACAACAACTGGGTACTGGAAGGCCACAGGGTCTCCAAATCATGTTTATTCTTCTGATAATCGCATCATTGGCATTAAAAGGACCATGGTGTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACTGATTGGAAGATGAACGAATATACGGCCATCAAAGCTGACCCTTCTTCATCTACTTCTAATAAGGCAGTTCCTACGTTGAGGAAGGAATTCAGCCTATGCCGAGTGTACAAAAAATCGAAGTGCTTGCGAGCATTTGATAGACGACCAGCAGCAAGGAGGGAGGTAGGAAGGTATTCAGGTTCTGAAAATGGTGAAGAGCAACAAAAGGGTTCAACATCATATCATGGAATGGTGGAGAGAAGTGCAACATGTTCACCAGAGAGTTCATCCTCCGGAGACCATGACCAACCCCCCCTGCACGCTGAGGAAGCTACTACCCAAATGGATGTTGACAACGACCCTTTCTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCCGAACCATGA 777 0.4543 VSNMANMPPGYRFYPTEEELISFYLHNKLEGIREDMNRVIPVVDIYDYNPSQLPQISGEASLKDTEQWFFFIPRQETEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKADPSSSTSNKAVPTLRKEFSLCRVYKKSKCLRAFDRRPAARREVGRYSGSENGEEQQKGSTSYHGMVERSATCSPESSSSGDHDQPPLHAEEATTQMDVDNDPFLDWEKVDLFLGSEP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02351 258 Gene3D NAC domain 16 171 IPR036093 GO:0003677|GO:0006355
Pste5g02351 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 215 - -
Pste5g02351 258 SUPERFAMILY NAC domain 3 167 IPR036093 GO:0003677|GO:0006355
Pste5g02351 258 MobiDBLite consensus disorder prediction 181 242 - -
Pste5g02351 258 ProSiteProfiles NAC domain profile. 7 167 IPR003441 GO:0003677|GO:0006355
Pste5g02351 258 MobiDBLite consensus disorder prediction 190 224 - -
Pste5g02351 258 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02351 Pste-Chr5 15975278 15976774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02351 10 250 NAC Transcription Factor Family AT5G22380 49.587 1.48e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste5g02351 NAM 1.1e-29 No_clan