Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02350 GATTTTGGGTTGTTGAAAGATATGGCTGAGGTGGTGAAATCGGAGGAGTGTTGTCAGGAGAATAAGCAATCTATTGCTGCTTCTTCCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATATGCAGCCCTGCATCCACGTCGCCCTCACATCGGAGGACCACCGGTCCTATAAGGCGTGCTAAGGGCGGTTGGACAGCTCAGGAGGATGAGACATTAAGGAATGCCGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTAGTGGCAAAATATGGACCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGATGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCGTGGAATTTGGAGGAGGAATTAGCCCTAATGAATGCTCATCGTATACATGGGAATAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAACCACTGGAAGACTTCCACCAATTCCCAAGAATAGTCCACAAGTTGCTGTCAAAGATACAATTAGACGGTCTGCTAGTAAATCAATACTTGTTTGTTCAAATAAAGAATTGAATGCAGCTGTTGAAACATCATCTGAAACAACAGCCATTAGTAAGCTAGATGACGGTGGCAAGAATCAATTCGAGTCCTCTGGAATCGTCAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCCGATTCTGATTGTGCAGAATGCAAGCCTGGATCATCCAACATTGATATTAGCTTTAGCAACTCAGAACAAGTGTCAAGAGTTAATTTTGGAACTACGGTTGGTCCAAAATTTGAAAATTCTGGACTCAATGGAAACTCAACTTTTGAGCATTTTACAAAAACTGGTGATATGAGCAGTACAAGGTTAATCAGAATACCTTCGCAAGAAAGTCCAACCTGTGGTTCTCTGTGTTATGAACCACCACAGTTAGATGGTTCCATTCCCATAGATTCTCTTTATTTAAATTATATTTGCCTGCAGAATGAATATTGTTCGAGTCCAACAATGTCACCTATTGGTTTCTTCACTCCACCTCGTGTTAAGGGTAGTGAATTATGCTCCGAGACACCTGAATCTATATTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAGAACGGGAGCCCAAACACTCACCAGTCCTAGTAAAGTTTTGAAGGTAGATAATGATCCACTTACTTGTAATGAAACAGAGAGAACCAATGATGATTCTGGTTCTGGGCGTTTCTCTGGGAGTCCAGCAAACCAAGGAAATGGAATTGACATTCCCAATAATAAGGCATTCAACGCATCTCCCCCGTACAGGTTAAGATCCAAGCGAACAGCGGTTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGATGACAAAAGGAGCAATGTGATGACCGAAGATTGTATGCATGAAACCAAATTGGTTGTGACATAG 1686 0.4152 DFGLLKDMAEVVKSEECCQENKQSIAASSSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVAKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWNLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKTTGRLPPIPKNSPQVAVKDTIRRSASKSILVCSNKELNAAVETSSETTAISKLDDGGKNQFESSGIVREVGDSSSVPANESADSDCAECKPGSSNIDISFSNSEQVSRVNFGTTVGPKFENSGLNGNSTFEHFTKTGDMSSTRLIRIPSQESPTCGSLCYEPPQLDGSIPIDSLYLNYICLQNEYCSSPTMSPIGFFTPPRVKGSELCSETPESILKKAANTFPNTPSILRRRRTGAQTLTSPSKVLKVDNDPLTCNETERTNDDSGSGRFSGSPANQGNGIDIPNNKAFNASPPYRLRSKRTAVVKSVEKQLEFAFDKEKNDDKRSNVMTEDCMHETKLVVT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02350 561 Gene3D - 119 170 - -
Pste5g02350 561 MobiDBLite consensus disorder prediction 465 512 - -
Pste5g02350 561 Pfam Myb-like DNA-binding domain 67 113 IPR001005 -
Pste5g02350 561 Pfam Myb-like DNA-binding domain 171 214 IPR001005 -
Pste5g02350 561 Pfam Myb-like DNA-binding domain 119 165 IPR001005 -
Pste5g02350 561 MobiDBLite consensus disorder prediction 45 59 - -
Pste5g02350 561 FunFam Transcriptional activator Myb isoform A 66 118 - -
Pste5g02350 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Pste5g02350 561 SMART sant 118 167 IPR001005 -
Pste5g02350 561 SMART sant 66 115 IPR001005 -
Pste5g02350 561 SMART sant 170 218 IPR001005 -
Pste5g02350 561 SUPERFAMILY Homeodomain-like 116 212 IPR009057 -
Pste5g02350 561 Gene3D - 66 118 - -
Pste5g02350 561 MobiDBLite consensus disorder prediction 484 505 - -
Pste5g02350 561 Gene3D - 172 245 - -
Pste5g02350 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 220 IPR017930 -
Pste5g02350 561 CDD SANT 121 165 IPR001005 -
Pste5g02350 561 FunFam Transcriptional activator Myb isoform A 119 171 - -
Pste5g02350 561 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
Pste5g02350 561 ProSiteProfiles Myb-like domain profile. 114 165 IPR001005 -
Pste5g02350 561 CDD SANT 70 113 IPR001005 -
Pste5g02350 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 169 IPR017930 -
Pste5g02350 561 PANTHER MYB PROTEIN-RELATED 67 152 - -
Pste5g02350 561 MobiDBLite consensus disorder prediction 24 72 - -
Pste5g02350 561 SUPERFAMILY Homeodomain-like 64 120 IPR009057 -
Pste5g02350 561 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Pste5g02350 561 MobiDBLite consensus disorder prediction 24 38 - -
Pste5g02350 561 CDD SANT 173 216 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02350 Pste-Chr5 15970066 15978010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02350 5 543 MYB Transcription Factor Family AT3G09370 48.101 2.20e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g02350 Myb_DNA-binding 2.8e-13 CL0123