Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02344 ATGAGTGTCCCTTATCATTCGCGTGCCCTTTGGTTTCTTTCTCGCATATTAAGCGCTGAAACTGACGTACCCTCTCTGTTACAGTGTGGGGTCTCTCTCCATGTCTTGTCTTATCACGCTTTCCTCTCTCTCTGGTCCATTTTACTTCTCTTCTCTGTCTTTACTCCAACACCACCTCGGTTTCCACTTTCTCTCTGTTTAAGATCCCACCACTTCTTCATCTTCTGCCCCTTCTTCTCACTTCACCCCATCCTCCTTTTCTCAGCTCTTCCATCTTTTTGCTTTTTCACCATCTGGGTTGCTTCCTTTTTTCACGTCATATGTAGGAACCATCTTCGGTGCTACCTTGTGTCACAAAGGTGCTTTTTCCCCCCCTTCTTTTTCTGTTGTGTTTTTGAGTTGTGGCTTAGTGGATTCTCATGCTGTGGCTTTGTCGGTCATGTTTTTTATGGTTTTATTGTTTTGCTATCTTCTTTGCTTTTTGTATGCACGTTTGAGGATTTGGTTCCTGTGAGTTTGTTACTAGGGAGAAAGTGCAGGGAGGCTCTTTTCAGATTTCAAGTTGCAAGCAACTGGCTGTGGGATTTGCACTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTACGCGCATATGTCAAACAATATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCCAAGTCATGTTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATAAAGAAAGGATCTCTCACTGAGGAAGAGCAGCGTCTTGTCATCAATCTTCAAGCAACACACGGGAACAAGTGGAAGAAAATTGCAGCACAAGTCCCTGGTCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAGCAAAGAGAAACAAAGGGGAATAGCTGCACCATTGATCCAATCAACGATAGCAAGTACGAGCATATACTTGAGAGTTTTGCAGAGAAGCTAGTGAAAGAGAGGCCTTCACCATCATTTGTTATGGCCACTTCTAACAGCTCTTTTCTGCATACTGATGCACCGGCTCCTGCGCCGGCTTTGCTTCCATCTTGGCTTTCAAATTCCAATGGCACTGCACCTGTGAGGCCACCCTCTCCATCTGTGACTCTCAGCCTTTCTCCCTCCACGGTGGCAGCGCCACCTCCATGGCTGAGAGGACCACCAGACAATGCTGCTCCTCTTGTTTTGGGGAATGTCGCACCTCATGGACCTGTTATGGCATTTGGTGAAAACATGGTCATGTCTGAGTTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCACACAAGAAGGAGGCGGCATGGCGGTTAAGCCGGGTGGAGCTGCAGTTGGAGTCTGAGAAGGCTGGCCGACGGAGGGATAAGATGGAAGAAATTGAATCAAAGATCAAAACTCTGAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATACAGAGAACAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCAAAACACTTGCGCCTTACCAAGTTTCTTGAACAGGTAGGATGCAGATCAAGGCTCAATGAACCAAATGGAAGATAG 1662 0.4693 MSVPYHSRALWFLSRILSAETDVPSLLQCGVSLHVLSYHAFLSLWSILLLFSVFTPTPPRFPLSLCLRSHHFFIFCPFFSLHPILLFSALPSFCFFTIWVASFFHVICRNHLRCYLVSQRCFFPPFFFCCVFELWLSGFSCCGFVGHVFYGFIVLLSSLLFVCTFEDLVPVSLLLGRKCREALFRFQVASNWLWDLHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNSCTIDPINDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDAPAPAPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLRGPPDNAAPLVLGNVAPHGPVMAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKAGRRRDKMEEIESKIKTLREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLNEPNGR 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02344 553 Gene3D - 261 321 - -
Pste5g02344 553 ProSiteProfiles Myb-like domain profile. 253 303 IPR001005 -
Pste5g02344 553 ProSiteProfiles Myb-like domain profile. 198 252 IPR001005 -
Pste5g02344 553 Gene3D - 203 257 - -
Pste5g02344 553 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 200 548 - -
Pste5g02344 553 Coils Coil 502 522 - -
Pste5g02344 553 Coils Coil 473 500 - -
Pste5g02344 553 CDD SANT 205 252 IPR001005 -
Pste5g02344 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 307 IPR017930 -
Pste5g02344 553 Pfam Myb-like DNA-binding domain 206 267 - -
Pste5g02344 553 SUPERFAMILY Homeodomain-like 203 297 IPR009057 -
Pste5g02344 553 CDD SANT 262 303 IPR001005 -
Pste5g02344 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 252 IPR017930 -
Pste5g02344 553 SMART sant 202 254 IPR001005 -
Pste5g02344 553 SMART sant 257 305 IPR001005 -
Pste5g02344 553 FunFam MYB-related transcription factor 203 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02344 Pste-Chr5 15924784 15927544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02344 200 544 MYB Transcription Factor Family AT2G37630 64.932 3.84e-150 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g02344 Myb_DNA-bind_6 4.6e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02344 5 15924784 15927544 Pste5g02344 5 15924784 15927544 ECH