Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02322 TAAACAACAATTAAACTGGCCTATTATTTCCAGGCAACTACTGGCATCTAACTTTCCAGAAATTCTGAAATTCATTTCTCCGTAGATATTTTTTGGTCTTTGATTGGCCTGATGAGCATTGTTGCCCTCTTGATTTTTCGTTCAGACTTCTCTCTTGCTGTCTCTGTTACTTTTGTTTCTATGTTATGATGATCCCTGGATTAAAAAACAACCATATTGCTACTCCTTGGTCCATGTCTCATGGCACAGTTTCAATCAAAATTCTTACTCTTCTATTCCATTTGGCCTCTCATATTGTTTCCCCCTCACCATATTTGCAATCTCTCTTCTATGAATGCTTCTGGCATCTGTGCTTCCTTCACAGTTCCCCTGCAAGCTTGCTTTTTTAGATGCAAAAAATGCCTGGGACAAGACAGAGAGATGTAAAGGCCCAAAATCCAGAGTCACCAGAGAGGAATAGTGAGCCTGAAAAACCTACAGATTCTGATGAGCTGGTAGACTTTGATGGGGACAACGATCAAGAGGTGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGTAGAAGTGGAAGAGGATGAAGATGAAGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGTGGAAGTGGAGGAGGAAGAAGAAGAGACTAAGCCCTCAGATGGTGAAGATGAGACAAGAGTGCCAGAAACTAAGGATGAAGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCACCAAATGTTGCTGAAGAAGATTTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTTTCAGGGGTTAGGATAATGAAGGGGAAAGAATCCGGTGAAGCAAAAGGATATGCTTTCGTGACCTTCAAGACAAAGGAATTGGCAGCTAAGGCTATTGAGGAGCTGAACAACTCCGAATATAAGGGGAAAAAGATAAAGTGCTCGAAATCTCAAGCTAAGAACAGGTTGTTTATTGGTAATGTTCCTAGAAATTGGACTGAAGAAGATATGAAGAAATCTGTTTCAGAGATTTGCCCTGGAGTAATTTCTGTGGAACTGTTGAAGGAGATGTCAAACTCAAACTTTAAACTTGGCAGCAATGCTCCAACAGTGAGCTGGGCTGATCCAAGGAATTCTGAATCATCTGCAACCTCACAGGTAAAAGCGCTGTATGTTAAGAACCTTCCAGAAAACATTACTCAAGTTCGTCTTCGACAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCTAAACCCGGGCAAGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAGGTGCCATGAAAGCATTGAAGAACACGGAGAAATATGAAATAGATGGACAAACACTTGAGTGTTCTCTGGCGAAGCCACAGGCAGATCACAAATCATTTGGAACAGCAAATCCAAAAGAGTCAGTTATAGTTCCCGCTTATCCACCTCATCTTGGCTATGGTATGGTTGGCGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCTGGACCAACACATGCAGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTATTGCAACAGCCAGGGTTTCAACAGCCTGCTCCAATGCCAGTATCACGATTTGGAAGGAGTGGTGGCAGTGGCTCTAGTGGTGGGAAATGCGGTAATGATAATAATCGCCGGGGGCATGGCCGATATCATCCCTACTAACTATGGACTTTAAAGGAGCTTCCAGGAAATCAAGGTTTGTTCCGGCTTGTCAGTGTTTTGCCTCCAATGCGGAATTAAGCTGTGGCTGAACAGATAAAATATTCTGAACATGAAATTACTATTCAACTCATGTATATTTGTTGAAATTCATACATATAATGCCTTCCATTTTCCCCCCTTATCTCTGCGTGATGGATAATTTATGAAATATGATTTTTCTTTGCGTCCATCAGCAATTGCACCAGAGGCTTAAAAGTTTTGACTCAAAGCACGGAGCCCAAACGGTTAAGACAAATAGGGCGCTGTTGTGAATGAAGTTACGATTTTTGTAAGATTAATACATCTACTAAGGGTAAGATCCACTGTGTAGCACTAGCTTCTAAGTCAGGTTTTCATATAATTTTATTTATCTTGTCCTTTAATTTTTTGTTCTCGAATTCTTAAAGAGACCACAGTGATCTGAAGGGCATGATAAATCTTGCTAGATTGATGAAAAGAATGAAGTAGGTGTTTCACATATTTAGCTTGCGGTTGATGTATTTATTGGGGGTAGGCATGGATTATTTGGATTCGATTTATGTTATTTTATTCCATCTGACTAAATTGGATCAGATTTCTCTTTCTCTA 2387 0.4131 MQKMPGTRQRDVKAQNPESPERNSEPEKPTDSDELVDFDGDNDQEVEEVEYEEVEEEVEVEEDEDEDEEEEEEEEEVEVEEEEEETKPSDGEDETRVPETKDEVEKKKHAELLALPPHGSEVYIGGIPPNVAEEDLRVFCQSVGEVSGVRIMKGKESGEAKGYAFVTFKTKELAAKAIEELNNSEYKGKKIKCSKSQAKNRLFIGNVPRNWTEEDMKKSVSEICPGVISVELLKEMSNSNFKLGSNAPTVSWADPRNSESSATSQVKALYVKNLPENITQVRLRQLFEHHGKITKVVLPPAKPGQEKSRFGFVHFAERSGAMKALKNTEKYEIDGQTLECSLAKPQADHKSFGTANPKESVIVPAYPPHLGYGMVGGAAGFAQPLMYGPGPTHAGMAMMPMLLPDGRIGYVLQQPGFQQPAPMPVSRFGRSGGSGSSGGKCGNDNNRRGHGRYHPY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02322 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 345 IPR000504 GO:0003723
Pste5g02322 456 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 388 - -
Pste5g02322 456 Gene3D - 43 200 IPR012677 -
Pste5g02322 456 CDD RRM_SF 122 194 - -
Pste5g02322 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Pste5g02322 456 Gene3D - 250 361 IPR012677 -
Pste5g02322 456 MobiDBLite consensus disorder prediction 1 105 - -
Pste5g02322 456 SMART rrm1_1 268 341 IPR000504 GO:0003723
Pste5g02322 456 SMART rrm1_1 201 251 IPR000504 GO:0003723
Pste5g02322 456 SMART rrm1_1 121 194 IPR000504 GO:0003723
Pste5g02322 456 MobiDBLite consensus disorder prediction 14 35 - -
Pste5g02322 456 SMART rrm2_1 121 194 IPR003954 GO:0003676
Pste5g02322 456 MobiDBLite consensus disorder prediction 425 456 - -
Pste5g02322 456 Coils Coil 44 87 - -
Pste5g02322 456 Gene3D - 201 244 IPR012677 -
Pste5g02322 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 338 IPR000504 GO:0003723
Pste5g02322 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Pste5g02322 456 SUPERFAMILY RNA-binding domain, RBD 257 350 IPR035979 GO:0003676
Pste5g02322 456 SUPERFAMILY RNA-binding domain, RBD 117 257 IPR035979 GO:0003676
Pste5g02322 456 MobiDBLite consensus disorder prediction 36 89 - -
Pste5g02322 456 MobiDBLite consensus disorder prediction 90 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02322 Pste-Chr5 15761093 15766688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02322 120 435 Eukaryotic Initiation Factors Gene Family AT2G23350 26.300 3.19e-16 79.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02322 5 15761093 15766688 Pste5g02322 5 15761093 15766688 ECH