Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02294 CAAGGAACGCCGTTTCCTTACACAAAGAGAGAGAGAGAGAGGTATCTGTAACGGTAGCAGGAGGTAGCATAGCAGACACGATTCCAAAAGCTGCTTCCTCTCATAAATTCCCTGTCAACGCATAATCATTCCATTCAGTTATCCTCTGTGACACCATGACACGGTGATCATAATCATTACTACTTTGTGCACCCTTATGACAATGATGATGTCACGGATTTAGATTAATTGGTCACTTCCTCTGAAATCTCAACTTTGAACTCTGAACTAAACAACAAGAACAGCATTTGTAACAACCTTAAACGATGTCGTTGAACCGTGGTGGTGAAGAAGATGAGCTCTATGAGCAACTATGGAGGGCATGTGCAGGTCCCCATGTGGAAGTTCCTCGTGCTGGCCAAAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAGAAGTATCTACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACACTGGTGCCGGAATCTAATCAATCTGAGCCTGCGTGTCATGATCCATGCCCTGCCGAACTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACCAGCACCCATGGAGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCATTGGACATGTCTAAATCAATCCCAACTCAGGAATTGGTTGCCAAGGATCTTCAGGGCTATGAATGGCACTTTAAGCATATATTCAGAGGTCAGCCACGTAGGCACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAATTGCTGGAGACACCTTTGTGTTTCTGAGAGGAGACAATGGAAAATTACGTGTTGGAGTGAGGCGTCTTGCTCCTGCGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGTATGCATCTTGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGACTATCAACCAAAAATGTAATGTTGGTATAAGATTCAAGATGAAGTTTGAAGGGGATGAATCCCCAGAAAATGATAAAAGATTTTCGGGCACAATAGTTGGAGTGGACGATATTTCCCCTTACTGGGTAAATTCAAAATGGCGATCTCTTAAGGTTCAATGGGATGAACCAGCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACATCATTATCTCAACCTGTTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCAGATATTGGAGACACACCATTAGCTGCCCCTACTTTCTGGGATGCTGGGCTGACACAGTCTGATATGACACAACTTAGTATAATGGCCGAAAGCAAAAGGAGTGACAGTAATACCCATATCTGGCATCATAACAGTAGCAATGGTATATCAACGAATCAGACAGAAGCAAGTTGGCTATCTTCTCCTTCTCAATTATATCATGACACAACCAATGATAGCAAGAGCGTCTCAGCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAACAATGATCATTTCCTTGACCAGGTTGACAAAGAGATCAACAAAGTAGAGTCTGCTACAAGCTGTAGATTGTTTGGGATTGACCTTATTGATCATGCAAGCAACAACTCTCTTTCTATAGAGAATGCATCTGGAGTCCCCTCTGAGTGCAGAACTGATGTAAACCATGAGACTGATATCTCAAAGGCTTCTAAAGATCGGAAACAAGAGCAGTTCCAAGTATCCCTAAAAGAGACACAAAGCAAGCAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGCTTGCAGTGGGTCGTGCTGTCGACTTGACCACATTGGATGGGTATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAAAGCAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATTTTCATTTGTTCCAGCCAGGATATGCACAAATTGAGCTCAGGGAGCAAAACACCTATCTCTTCTATTGAAGAGACCGTAATAAGCTCAGACACAGCAGAGACCTGAAACTTCTATATTCTTGTCCTTTTTCTAAAGCTGGTTCTATTTTGAACGGTTGAGGCAAGGATGTTGGTCTATTTTTGGCTAGGCAAGTTTCATGTTCAAAGTGAAACACTATTGTAGCTCGATATAGAGACTCGAGACACTAATTGAGTTCCAATGACAAAATTGAAATTTTAATAAATTAGTTTCGATAAGCGAAAATTTGGCTTAGCAGATGTGAACATTCGTTTAATGTGTCTGTATTTGAAAGCAAAGTGTGCCTTTGTCGCCTTGAAACTTGAAAATTGTAGTGAATGTCC 2581 0.4204 MSLNRGGEEDELYEQLWRACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQSEPACHDPCPAELPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSIPTQELVAKDLQGYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLIAGDTFVFLRGDNGKLRVGVRRLAPAQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLETINQKCNVGIRFKMKFEGDESPENDKRFSGTIVGVDDISPYWVNSKWRSLKVQWDEPASFPRPDRVSPWEIEPILASVPTSLSQPVVIKNKRPRQASEVPDIGDTPLAAPTFWDAGLTQSDMTQLSIMAESKRSDSNTHIWHHNSSNGISTNQTEASWLSSPSQLYHDTTNDSKSVSAWPISKTHSERLNNDHFLDQVDKEINKVESATSCRLFGIDLIDHASNNSLSIENASGVPSECRTDVNHETDISKASKDRKQEQFQVSLKETQSKQVCSRSCTKVQMQGLAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQSRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDMHKLSSGSKTPISSIEETVISSDTAET 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02294 659 Gene3D - 278 351 - -
Pste5g02294 659 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste5g02294 659 SMART B3_2 117 219 IPR003340 GO:0003677
Pste5g02294 659 MobiDBLite consensus disorder prediction 514 529 - -
Pste5g02294 659 CDD B3_DNA 115 217 IPR003340 GO:0003677
Pste5g02294 659 ProSiteProfiles PB1 domain profile. 549 630 IPR000270 GO:0005515
Pste5g02294 659 Gene3D - 114 218 IPR015300 -
Pste5g02294 659 MobiDBLite consensus disorder prediction 506 529 - -
Pste5g02294 659 Pfam AUX/IAA family 530 585 IPR033389 -
Pste5g02294 659 Pfam AUX/IAA family 590 636 IPR033389 -
Pste5g02294 659 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Pste5g02294 659 Gene3D - 545 637 - -
Pste5g02294 659 FunFam Auxin response factor 544 637 - -
Pste5g02294 659 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Pste5g02294 659 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste5g02294 659 FunFam Auxin response factor 278 351 - -
Pste5g02294 659 SUPERFAMILY CAD & PB1 domains 552 625 - -
Pste5g02294 659 FunFam Auxin response factor 115 219 - -
Pste5g02294 659 SUPERFAMILY DNA-binding pseudobarrel domain 108 246 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02294 Pste-Chr5 15510903 15516473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02294 4 641 B3 DNA Binding Superfamily AT4G23980 57.863 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste5g02294 AUX_IAA 5.3e-12 CL0072