Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02235 ATGGACTTCCGTCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACCACAAACACAGTCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCAAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTACTACTACCACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTTCTTCAACCAATCAAGAAAAGCCTTCTTCACTCTCCTCACTATTTACTCCATCACCATCTCCAACATTACCAACCTGCTTTGCTGCAATCAGGGTATTGGGGGAGAGGAGCTATGGATCCGGAGCCAGGGCGGTGCCGGAGAACGGACGGGAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGACACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTAATTGTGGCGGTGGTGGAACTCTAGGACTAGCTGCTTCATCTTCCATTTCTTCACCGCCTCTAGCTTCTGCTTCACTCAAATCCCCTTTTGATCTTCTTCATCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACAAGAACTTGTTTGAAAGCGAAGATCATGTGGGTGGGGATGGCAGAGAAGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCAGGCCGGATGAACTCGGCCACATGCCTCTCTATTTCAATGCCTGGAAATGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCGGGCCCAAGAAATGAGAATGTGGGCCTCGAGGCAGAGCCATTGCAGTTGAATTGGGCTGGAGCATGGGCCTCGGCTAATCAAGTGGCTTCAATGGGTGGACCACTTGCCGAGGCACTCAGATCATCTGCCTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGCTGGATCTGAGACCAGCTTCATTAGCACCTGAATTTACTCACTTGGTGCCCCAATTATTTTTCTTTTTTTGCTTTTGAGCCTTCTTGGACCACGGTTATGTTCGTATCAAAATCCTATGGACCACTTTTGTTTCTAATTGGGCGATTAAAGGATATGGTCGGTTCCTGGTTACATTTCTCTGCCACGTGCACTTAATTTGGTGCTCATACTGGGTTCCCCTTTAATTTATGCCATTACTTACGTCTTGTTAAGCTACTTCAGTTCCTAAATATTCCCCAAGTAATAGATAGTTAGGATGTGTTTGGTGTGGAGTTAATTTCGACTCTAATGATAAAAAGCCAAGTTAGAAGTCA 1474 0.4715 MDFRLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLATTTTNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYLLHHHLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSANCGGGGTLGLAASSSISSPPLASASLKSPFDLLHLNERSSGTKNEDKNLFESEDHVGGDGREGGHMLRHFFDDWPRSLQDSDNVENNAGRMNSATCLSISMPGNASSDVSLKLSTGYGEDPGPRNENVGLEAEPLQLNWAGAWASANQVASMGGPLAEALRSSASTSSPTSVLHHLPRGSAGSETSFIST 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02235 383 PANTHER GROWTH-REGULATING FACTOR 5 35 301 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pste5g02235 383 MobiDBLite consensus disorder prediction 354 383 - -
Pste5g02235 383 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste5g02235 383 MobiDBLite consensus disorder prediction 1 38 - -
Pste5g02235 383 Pfam QLQ 76 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste5g02235 383 Pfam WRC 144 186 IPR014977 -
Pste5g02235 383 MobiDBLite consensus disorder prediction 1 23 - -
Pste5g02235 383 MobiDBLite consensus disorder prediction 173 194 - -
Pste5g02235 383 MobiDBLite consensus disorder prediction 232 254 - -
Pste5g02235 383 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste5g02235 383 MobiDBLite consensus disorder prediction 24 38 - -
Pste5g02235 383 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02235 Pste-Chr5 14939945 14942983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02235 1 369 GRF Transcription Factor Family AT3G52910 51.163 2.31e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pste5g02235 WRC 2.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02235 5 14939945 14942983 Pste5g02235 5 14939945 14942983 ECH
Pste5g02235 5 14939945 14942983 Pste4g02378 4 16971632 16974427 PCT