Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02225 CATTAATATAGATTTAAATGGAGAGTGGATTTTATGAACCCCATAGCACACCCCCAAATCCCAATTCTTCAAATCATTTTCAGTTCACGTATCTCTGTGACAAACTGCGCCACTTTCTCTGCTGCATAAGATCATGATAATTATTATATCCTTTCCTTTCACAGTCACTATCACTTCCACTATTCTTCTCTGCTACTTCCGTCACCTGTTCTGTTCCACCCTCTTTCTTCTTCATCATCATCAAGTGCAACTAGAAGGGTTACTTTCTTCTTTTCTTCACTATGGCTGAGGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTAAGAGTTTTCGCTCAGACCCAGCCTTGTTTCCTTGAATATTCACCCACCCTTCACTCCACTTGTCCAACTTTACCCTCTCTCTACGATCCTTCGCTTATTCCCTCTGATTTGTTAGCTTGTGCCTCCCAACAAGGTGTTTCTGCTAAGGAAGTAGGTTCCAATTTGATGATGGGGTTTCTGGAAGGAGGGGTTGTTAATGGTGATGCAATTCAGGTTATCAACAGTAACAATAACCAACACAACAATACTAACAACAACAACAACAGCCCTTTTCTCTACCAGCTTCAGAACCTTAGGGAATTTGGTGATAGCTACGATGATGAGAGTGAAATGATGGTGTTCAAGCCCGAGCCTTTGTCTTTGTCTTTGTCTTCCCACAGTAACAGCATTCATCACCCTTTGGAACTGAATCTTCAGCGATATGAGGCTGCTATTTCGGGTTTGGTTGGAGGGAACAGTGAAGTTTCGAGGAATTCGATTCCACTTGGACCCTTCACGGGGTATACTTCGATATTGAAGGGATCAAGGTTCCTAAAGTCTGCACAACAATTATTGGAAGAGTTATGTGATGGTGGGGTTCGTGGAATTTACGCTACCGAGAAGATTATTGCTCCTGATACATCGTTGATGGAACCTCCTCATGAGGTTTTAAGTGCTAGTGGAGTTGTTGGTGGGGATGATCCACTCGGGGAATATGGGAATGAGTGTAGGAAGAAGAAGTGCAGGCTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGGCAGTATTATCAACATATGCATTCAGTATTAACTTCGTTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCGTATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCTATTGCTGACCAATTGCAGTTCATCAACAAGGCTCCATTTCAGATGAGCAACAGAAAGGATGAATCTCCAAGGTTTCACATCAGTCATAGGGGCGCATACAGCCAAAGACCTGGATTCCTTGAGCACCAACAACCAGTTTGGCGGCCTCAAAGAGGACTCCCTGAGCGTGCTGTGAGCGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTGCACCCGTATCCTACTGACACTGACAAGCTAATGTTGGCTAAACAAACCGGCCTTTCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCGAGAGTAAGGCTTTGGAAACCTATGGTGGAGGAAATACATATGCTAGAATCACAACAAACTCAAAAAAAGCCAGAGAGAGAAGAACAAAATAGAAAAAACTTAAGTGATCATTTACCTTCAGGCAACTTTCTTGTTACTGAGAATTCCCCTACCTCCATGGGGAAGTTTCATGAAGTTCCTTATAAACACAATAGAAATGAACTTGCTAATATCCAAGTGAGGAGTCAGGAACAGTTGCTGAATCAGACTAACACAAGCAATCAGCAAGTGGGTGTTGGAGGGAGCATAGGGAATGGTAGTGGGGCAAGCAATAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTAATGGGTTGTCTGAGCCCTATAGTATGAGAGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTCAGGGCTATGTTATCAATGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATCTTATTGGAGCAGGGCAACTGTTGCATGATTTTGTAGGCTGAAAATTCAATCCACTAACTTTGCTTGGACTTCATTTAATTCGGTGATCAATACTATATTATATTATATACTAACCATATTTTATGTTGTTGCTTCCACCAACCATCAGAAATTAATTAGGAAAAGGAAAGAAATTGAAATATTGGTCTTCTATGGTGCATTGGTGCTACTACTCAGTTTGAGATCCCACAAAGACTGTAAACGAAAGTCATTGTAAATTCATTTTAGGAGAAAAGTATTATGTGGTAGGCTTATTCGTTATCCAATTCTCCCTTGACCCTTGTGTTGGTCTTGTGGGCAGCATAAGATTAAATATTTCCTTTTGCTATTGTTAACCAGAAAAACCCTGTAAACTATATTTCAATATCTAGTCTTGCACTAATTTTCTTTCATACCTTTTTAATGGAAGCGTAAGCAAGCTGCAGCACTAGGTACCTGACATGGAGTATAGATTTATCCCTGGTAATTGTTGTGTAC 2526 0.4137 MAEEGFEHYHVPQQSRRDKLRVFAQTQPCFLEYSPTLHSTCPTLPSLYDPSLIPSDLLACASQQGVSAKEVGSNLMMGFLEGGVVNGDAIQVINSNNNQHNNTNNNNNSPFLYQLQNLREFGDSYDDESEMMVFKPEPLSLSLSSHSNSIHHPLELNLQRYEAAISGLVGGNSEVSRNSIPLGPFTGYTSILKGSRFLKSAQQLLEELCDGGVRGIYATEKIIAPDTSLMEPPHEVLSASGVVGGDDPLGEYGNECRKKKCRLLTMLDEVYRRYRQYYQHMHSVLTSFEYVAGLGNAAPYASLAINAMSKHFRCLKNAIADQLQFINKAPFQMSNRKDESPRFHISHRGAYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQTQKKPEREEQNRKNLSDHLPSGNFLVTENSPTSMGKFHEVPYKHNRNELANIQVRSQEQLLNQTNTSNQQVGVGGSIGNGSGASNNNGVSLTLGLHQNHGNGLSEPYSMRAAQRFGVALQPQGYVINGFESQNRHFGRDLIGAGQLLHDFVG 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02225 589 ProSiteProfiles 'Homeobox' domain profile. 362 425 IPR001356 GO:0003677
Pste5g02225 589 MobiDBLite consensus disorder prediction 434 452 - -
Pste5g02225 589 Gene3D - 368 430 - -
Pste5g02225 589 SMART prehox3 186 321 IPR006563 -
Pste5g02225 589 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 447 - -
Pste5g02225 589 FunFam BEL1-like homeodomain protein 9 368 430 - -
Pste5g02225 589 MobiDBLite consensus disorder prediction 434 461 - -
Pste5g02225 589 CDD homeodomain 365 426 IPR001356 GO:0003677
Pste5g02225 589 SMART HOX_1 365 429 IPR001356 GO:0003677
Pste5g02225 589 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677|GO:0006355
Pste5g02225 589 Pfam Associated with HOX 191 320 IPR006563 -
Pste5g02225 589 SUPERFAMILY Homeodomain-like 367 432 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02225 Pste-Chr5 14826929 14833159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02225 130 589 Homeobox Transcription Factor Family AT5G02030 49.689 8.44e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pste5g02225 POX 1.2e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02225 5 14826929 14833159 Pste5g02225 5 14826929 14833159 ECH