Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02200 GGGAAGCGAGCTTCACTCCCCACTGGTGGTGGCCTTCGTTCACTCATATAATATAATCCCCATTCGCAGCCTACTTATAAACACTCCAGCTCCTTCCACCTTCTTCTACCCTTCCCCTCTCTCCCTTATTTATTTTTTCATTAATTCATGTAAATTAGGATTAGGGTTTATCTCAATTCGCACTGTACTGTTTTAAATTACAACTTCCGTTACCATTCATTTCCCTCTCCTCAATAAATCGGCGCGAGAACTAATAACGGGGATGCTACTTTCGTACTGCAAATCCTGTTCCTCACAAGTGCGTCGCGTAATTGAGACCGTGTTAGGGTTAGGGTTAGGGTTAGGGTATTAGATTCGTTTGCATTTGATTTGAATGAGCATGGAGAGCACGCGCAGATCGTTGGACAGATCGAGAGAACCGGGTCCCAAGAAGCCTCGATTGATTGAGGAACTCAGCGCACGACAGTTACCTCAACGACAACAAGTGTCTGGGGCAGTTACTACGTTGGCATCTACGAGGTATCGAGCAAATGACAGAGACTCTGAAGGCGGTGGGGGATACCAGCCGCAGCCTCCGCCGCACCTAGAGCTTTTGAGTCAGTATAAGACCGCCCTTGCTGAGCTCACTTTCAACTCGAAGCCGATAATTACCAACTTGACCATTATTGCCGGAGAGAACCTTTCTTCTGCCAAGGCAATTGCTGCCACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTATATCTCTTAGACAGTATCGTTAAGAACATTGGGCGTGATTATATAAAATATTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTGTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTAGTTTTGCATCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCGCAACGCCCACCTCATAGTATCCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCAAGTAGGAGTAAAGGAGTAGTTAATGATATGACTGGAGGCATTTTAAACTCTAACGAGGATGCGGAGAGGCCACATAGAGCTCTGGGTTCGTCACGACCATGGCTGGATCCCAGGATTAACATGCTTAATAATCAGCACACACGTAGAGATGGATTTAATGATTCTGTTCCTGAAAAGAGCATTGATGGATCATATGGAGGCAATGAATACAGTTCTGGCATTTCAGGTAGTTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTTGTTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGTGGTGATGCAGAGACCATATCGGGGGAAAGAAATGGTTTCAGTCTCAAGCGTAGTTTTTTAAATCAGGAAGCACCAAAGTCCATGACTTTTGATGCACATCATCAGCCAAGACAAAACATAACTAACATACGGAGCAGTATGATGTCAGGTAACTGGAAAAATTCTGAAGAAGAGGAGTTCTCGTGGGATGAGATGAACTCTGGTTTGAACGATAATGGGCCCAATGTGTCAAGCAATATGAGCATAGACTCATGGATGGCTGATGATGAAAATTTGGAACGTGAAGATCATCTCCAAATCACGCGTCCTTTTGGAGCAAAGGTTGGTAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTAGGGGGCAATCCGCTGTCCTCATGGCAAATGCAGAAGCACCACTCAATTGATAAGTTGAACCTGAAACCAGGCTGCTCAGAAGGATTTGTGCCCCCTCTTATTGGCTTACCAACCAACACAAGTTCTTTGGCTGTCAAGAAGGGGAACCACTCTTCTATGCCAAATGCAGTAGCAGGAATGACCAAAATTGTGGGACAATTTGATGCTGGAGAAACTGAATCACCTTCAGTGCAGTCACCTTTGCGACAACAGTCTCCATCACTGCCAGGAACAGTACACCACTCTCATTCAATGCAAAATTTGGATAAGCAAGAAATGCCCCAAAATCTCAAAACATCTCATTTTTTGGGAGGTCCAAAAAGTCAGCATATCAGAGATTGCTTGCCTACACTTTGCCCCGATGTTCAGGTTGGTAACTTGCGAAGATCACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGTTACTACTTTTCGACCAAAGCTTCAGCAACAGCAGCTGGACACTTCTCAGACTGAAGTTACTGCTGCTAAAACTAAACTGCCCCAGCCTAAAGCTCCTTTAGCTAGAGAAACATCAGAAAAGTTGACCTCAAATAATTTGTCAGCTGCAACTGTCAAGAGTGGAATCATCTCCAAGAAACCAATTACCAGTCATCTGGATCCAAGGAAGCTTCCATCTCAGTCTGGGGTTCAGCCTACCCGGTCTGGAAGGTTTTCTCCTACCAAATTAGTTTCATCAGGGTCTGCTGTTGTATCACCATCTTTGTTAGATCCTCTGCATAATGATTCATGTACACAGCCAAAAAAGCCTCAAGGAAAGGGTGGACACCCACCGCAAAGGCTTTCTACTCAACCACCTGCTTCATCTAATGTGAGCAGTTCCTCAGCTGCTAGCTTAAATGCTGCCAATACTAATAAATTAAATCCAATTGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCAACTATGGTACCAAGCGAGGTGCCAATAGGATCCAAAGATCGAACTGAAATCATTACCACCAGTTGCTCTTTACCAGATACATCAGTTTCTGGTTCTGCAGCTGTCCCTGTATCATCTTCCAGAGACGAGGTAGATTCTGCTACAAAAACCTTTCTTGCCTCACCAAAATCAACTAGCATGGAAATAAAAAATTTCATTGGCTTTGATTTTAGACCTAATGTGATTCGAGAATTCCATCCACCTGTAGTAAGGGACTTATTGGATAATTTCCCTCATCAGTGCAAAATTTGCGGTATTAGGCTTAAACAAGAAGAAAAGTTTAATAGACACTTGGAGTGGCATGCCTCAAGAGAACATGGTCCTAATAAGACATCAAGAAGTTGGTATGCCAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATGTTCGTCTGAGTTTGAGTTTACTGACTCTGTTGATGTACTCGACAAAGAAACAGACAGAATGGTTCTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCATGAAACGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTACACTGATATCAACAGTGAGATGGAAGGTAGAAATTTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGATAATGATTAATGGTTTGCTTTAGCATTTGAGCTATGGCGTACTCAAGCTTTCACCTACCCACCCAGTTTCACATTGCATACTAAATTTTGATTGTCCTTTATACTTAAAATTTACTATGTCTAATTGGTCCTTAGAGCGGTCAAACAAATTTTGTGCTTTTTTGTTATTTTTTGTTTGTACCCGAGGAAAAAATTGCTTAGTATTAAAATATATAAATGCGAGATAGATTTTTGCAGCCAGA 3686 0.4273 MSMESTRRSLDRSREPGPKKPRLIEELSARQLPQRQQVSGAVTTLASTRYRANDRDSEGGGGYQPQPPPHLELLSQYKTALAELTFNSKPIITNLTIIAGENLSSAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQCLQMIEKELSFASAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTGGILNSNEDAERPHRALGSSRPWLDPRINMLNNQHTRRDGFNDSVPEKSIDGSYGGNEYSSGISGSLVSGAGRTGTKLVDLGHDKTWFKTDGGDAETISGERNGFSLKRSFLNQEAPKSMTFDAHHQPRQNITNIRSSMMSGNWKNSEEEEFSWDEMNSGLNDNGPNVSSNMSIDSWMADDENLEREDHLQITRPFGAKVGREISTVKKQLPGLGGNPLSSWQMQKHHSIDKLNLKPGCSEGFVPPLIGLPTNTSSLAVKKGNHSSMPNAVAGMTKIVGQFDAGETESPSVQSPLRQQSPSLPGTVHHSHSMQNLDKQEMPQNLKTSHFLGGPKSQHIRDCLPTLCPDVQVGNLRRSQEKDMQGPLSSVTTFRPKLQQQQLDTSQTEVTAAKTKLPQPKAPLARETSEKLTSNNLSAATVKSGIISKKPITSHLDPRKLPSQSGVQPTRSGRFSPTKLVSSGSAVVSPSLLDPLHNDSCTQPKKPQGKGGHPPQRLSTQPPASSNVSSSSAASLNAANTNKLNPIANLLSSLVAKGLISAETESPTMVPSEVPIGSKDRTEIITTSCSLPDTSVSGSAAVPVSSSRDEVDSATKTFLASPKSTSMEIKNFIGFDFRPNVIREFHPPVVRDLLDNFPHQCKICGIRLKQEEKFNRHLEWHASREHGPNKTSRSWYAKSSDWIAGKAECSSEFEFTDSVDVLDKETDRMVLADENQCLCVLCGELFEDVYCHETNEWMFKGAVYMNYTDINSEMEGRNLGPIIHAKCLSENSIVTNLDND 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02200 1026 MobiDBLite consensus disorder prediction 1 69 - -
Pste5g02200 1026 Pfam CID domain 78 187 IPR006569 -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 231 270 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 533 562 - -
Pste5g02200 1026 Gene3D - 69 196 IPR008942 -
Pste5g02200 1026 CDD CID_Pcf11 74 184 IPR047415 -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 625 662 - -
Pste5g02200 1026 ProSiteProfiles CID domain profile. 69 197 IPR006569 -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 625 640 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 684 731 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 1 26 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 532 562 - -
Pste5g02200 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 21 1017 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pste5g02200 1026 MobiDBLite consensus disorder prediction 676 759 - -
Pste5g02200 1026 FunFam polyadenylation and cleavage factor homolog 4 66 194 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 231 252 - -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 740 759 - -
Pste5g02200 1026 SUPERFAMILY ENTH/VHS domain 72 196 IPR008942 -
Pste5g02200 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 887 907 IPR013087 -
Pste5g02200 1026 SMART 558neu5 72 194 IPR006569 -
Pste5g02200 1026 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02200 Pste-Chr5 14556618 14562852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02200 31 410 C2H2 Transcription Factor Family AT4G04885 38.046 1.21e-60 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g02200 CID 4.2e-13 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02200 5 14556618 14562852 Pste5g02200 5 14556618 14562852 ECH
Pste5g02200 5 14556618 14562852 Pste4g02342 4 16767456 16775055 PCT