Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02189 TTTTTTTTTTTATATATATATATATATATATATATGTATGTATATGTATATGTGTGTACTTTCCTTCTGGTACACACACTCCAACACTCCAAATTTTGAGGCATATTTTTTGTCTCAACCTCTGAGAAAATATTATTTTTTTGTTGTTATTGTTGGGCTGTTTCTTTGTTTGCTCTTGGGTCAAAGAATGTCCACTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATATGAGTGGTGAAGGGAGCTTATGCTTCTCTGATGCTGATGATGGTTCATGTTATTCTCGATTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGCGTTTCTGATCCTGAGGTTGGGGGTGTTTCTCATTCTGGAAGAGCTTCTTCTGCTTCTGAGTGTTCTGTGGAGGTGGAAACTAGAAATGAAGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGTAGGATCTGTCACATGGGTTTGGAGAGTGATAGTCATGAGTCTGGTGCCCCCATCGAATTGGGATGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGACCTGGTTCAAGATTAAGGGAAACAGGACATGTGAAATTTGCCATTCTCTTGCTCTGAATGTTTACGGAGGAAACGAGGAGTCGACAGAGCATGTGAGCAATAACAATAACAATGCTAATACAGCAGTGACTCTCATTGCACCTGTCCCTTCTGCAGAACCTCGAAGATTTTGGCACGGTCATCGGTTCCTGAATTTTCTACTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCCTGAGGTTGTTTCATTTGTAATTTAAAGCTGAGTAAGTAGCAAAAAAGAGAAAGGTGAAAGTAAAAAAGAGCAAAAAGAGAAGAAAAAGAAAAGAATCTCACTCTTAAATTCATGGAGATACTTCATTAGAAAATGAATCCTTTTACAATTTAAGATCTTATTGGATTTATAAAAGGTAGTTTGTGATGCAAACAAGTTATTAGCAGTAATGCTTGTTAAGTGGGATTGCATCAGTTTTATCCATGCAAATATACATTTTTTCATCTGTTGTGCATTTGTCCTAAATTACTCAGCTTTACAAGGCTCTCTTATTCTATCTTTCAGAGTCAACGTAATTTGTTGACAAGTAGTTGAATGTTTATTCAAATG 1246 0.374 MYMYMCVLSFWYTHSNTPNFEAYFLSQPLRKYYFFVVIVGLFLCLLLGQRMSTLQMSHVDLEQGNHRRSVVGSDMSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVSHSGRASSASECSVEVETRNEVPEIKVHLAKVERDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAETWFKIKGNRTCEICHSLALNVYGGNEESTEHVSNNNNNANTAVTLIAPVPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02189 280 SMART ringv_2 154 207 IPR011016 GO:0008270
Pste5g02189 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 213 IPR013083 -
Pste5g02189 280 CDD RING_CH-C4HC3_MARCH 155 207 - -
Pste5g02189 280 ProSiteProfiles Zinc finger RING-CH-type profile. 147 213 IPR011016 GO:0008270
Pste5g02189 280 Pfam RING-variant domain 155 206 IPR011016 GO:0008270
Pste5g02189 280 SUPERFAMILY RING/U-box 152 209 - -
Pste5g02189 280 PANTHER ZINC FINGER, RING-CH-TYPE 65 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02189 Pste-Chr5 14445617 14448635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02189 119 280 C3H Transcription Factor Family AT5G05830 63.190 7.87e-66 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02189 5 14445617 14448635 Pste5g02189 5 14445617 14448635 ECH
Pste5g02189 5 14445617 14448635 Pste8g01312 8 6979462 6983955 ECH