Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02184 ATGGGATTTGGAACTGGTTGCGCTCTTCTTCGTCTACGTCCCAATTTCATTTCCTTCTTCTGCTCTCAATCACTCAGTCTTTGCGAAGCCCAACCCAAACATCAACATCAGCTGCGCCTTCAAAAGGTTAAAAAACTCGAGACCTTACTAAGCCGTGGTCACACGATCACCGCAAGAAGGTTCCTCAAATCCCTTCTTCTCTCCAAAACCGCATTCTCTTCACTCTCCGAACTCCACGCCCACGTTTCCAATCCCCTCTTTTCGGACACCCTCTTATGGCTCTGCAGCGTCTCCAAAATGCCCCACGAAGCCACCGACTTGTACTCTTCCATGCGAAAAGACGGTTTTCTCCCTTCCACGCGTTCCCTCAACCGCTTGCTCCGAACCCTGGTCGATTCCCGACACTTCCAGAAAACACTCACAATCTTCGCCGACGCTGTGGATTCTGGTTTTCGACCCGATGTTGTCACTTATGGAAAAGCTGTTCAGGCGGCGGTGATGTTGAAGGACCTCGATAAGGGTTTTCAGTTTATCAGTTCCATGGAAAAGGAAGGACTCAGCCCGTCCGTTTTCACTTACAACTTGATACTTGGTGGGTTGTGTAAAGTTAGAAGGATCAAGGATGCGCGGAACCTGTTCGAGGAAATGATTCACAGAAACCTTGTTCCAAATACTGTTACTTATAACACGCTCATTGATGGCTACTGTAAGGTGAGTGACTTAGAGGAAGCGTTTTGCTTCAAGAAGAGGATGAAAGAACAAAATGTGGAGCCTAATCTCATCACGTATAATTGCTTGTTAAATGGTCTATGTGGCTCAGGGAGGATGGAAGATGCCAGAGAGGTGTTGTTAGAGATGGAGCGCAATGGTTGTTTGCCCGGTGGGTTTTTTAGTGTTGTTTTTTATGATCATTCAAATGGTTCAGGTGATGGCGCTTTGTTTGATGGAAAAGAAATAGGGATCTATGAACGAACTTACTGTATTTTGTTGAATGGGTTGTGCAAGGCTGGAAGGATTGAAAAGGCTGAAGAGGTTCTGGCCAAACTTGTGGGTAATGGAGTTACTCCAACCAAGATTTCATATAACATACTGGTGAATGCATATTGCCAAGAGGGTGACCTGAAGAAAGCTATACTGACAACTGAGCAAATGGAAGTACAAGGGTTGGAGCCTAATCATATAACTTTTAACACTGTGATTAACAAGTGCTCCGAGACTGGGGAGGTGGAACAGGCAGAGACGTGGGTTAAGAGGATGAAAGAGAAGGGTGTTTCCCCTACTGTAGAGACCTACAACTCATTGATTAATGGTTATGGCCAGAGGGGCAATTTTTCCAGGTGTTTTGAGATTCTTGAGGAAATGGAGAAGATAGGGATAAAGCCTAATGTCATCAGCTATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGTAAGCTTCTTGATGCTGAGATTGTGCTTGCTGATATGATAGGTCGTCAGGTTTCTCCCAATGCAGAAATATATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTGAAAGATGCTTTCAAATTTTTTTATGAAATGGCAAAAAGTGGAATAGATGCAACTCTTGTGACGTACAATACGATGATAGATGGACTTGGAAATAATGGAAGGGTAAAGGAAGCTGAGGATTTGTTTCTCCAAATGTCCGGCAAGGGATGTAATCCAGATGTAATAACATATAACTCTCTGATCTCAGGATATGCCAAGTCACTAAACACCCAGAAATGCATTGAATTGTATGATAATATGAAGATGCTAGGCATAAAACCTACAATTGGGACTTTTCACCCTTTGATCTATGCATGCGGGAAGGAAGGGGTGGTGGAAGTTGAGAGAATGTTTCAAGAAATGTTACAAATGGATTTGGTCCCGGATCGATTTGTGTATAATGAAATGATTTACTGCTATGCTGAAGATGGAAATGCTCTGAAGGCAATCTCTTTGCACCAACAGATGGTTGATCAGGGAGTTGATTCCGACAAGGTGACTTACAATTGCTTGATTCTAGCATATCTTAGAGGTACAAAGGTTTCAGAAATTAAGCATCTTGTTGATGATATGAAGGCTAAAGAACTGGTTCCAACAGTTGATACATATAACATTCTGGTTAAGGGACATTGTGACATGAAAGATTTCAAAGGTGCATACTTTTGGTATAAGGAAACGGTTGACGGGGGTATGCTTTTAAATGAGCGCATGTGCTACCAGCTAATTTCCGGACTAAGAGAGGAGGGAATGCTGCGAGAGGCTCAAATTGTATCCTCGGAACTGACCAGTAGAGGACTCAATAACTAG 2328 0.4287 MGFGTGCALLRLRPNFISFFCSQSLSLCEAQPKHQHQLRLQKVKKLETLLSRGHTITARRFLKSLLLSKTAFSSLSELHAHVSNPLFSDTLLWLCSVSKMPHEATDLYSSMRKDGFLPSTRSLNRLLRTLVDSRHFQKTLTIFADAVDSGFRPDVVTYGKAVQAAVMLKDLDKGFQFISSMEKEGLSPSVFTYNLILGGLCKVRRIKDARNLFEEMIHRNLVPNTVTYNTLIDGYCKVSDLEEAFCFKKRMKEQNVEPNLITYNCLLNGLCGSGRMEDAREVLLEMERNGCLPGGFFSVVFYDHSNGSGDGALFDGKEIGIYERTYCILLNGLCKAGRIEKAEEVLAKLVGNGVTPTKISYNILVNAYCQEGDLKKAILTTEQMEVQGLEPNHITFNTVINKCSETGEVEQAETWVKRMKEKGVSPTVETYNSLINGYGQRGNFSRCFEILEEMEKIGIKPNVISYGSLINCLCKDRKLLDAEIVLADMIGRQVSPNAEIYNMLIEASCSLSKLKDAFKFFYEMAKSGIDATLVTYNTMIDGLGNNGRVKEAEDLFLQMSGKGCNPDVITYNSLISGYAKSLNTQKCIELYDNMKMLGIKPTIGTFHPLIYACGKEGVVEVERMFQEMLQMDLVPDRFVYNEMIYCYAEDGNALKAISLHQQMVDQGVDSDKVTYNCLILAYLRGTKVSEIKHLVDDMKAKELVPTVDTYNILVKGHCDMKDFKGAYFWYKETVDGGMLLNERMCYQLISGLREEGMLREAQIVSSELTSRGLNN 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 191 225 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 639 668 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 430 463 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 261 293 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 464 498 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 673 706 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 500 529 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 534 568 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 569 602 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 226 259 IPR002885 -
Pste5g02184 775 NCBIfam pentatricopeptide repeat 325 357 IPR002885 -
Pste5g02184 775 SUPERFAMILY HCP-like 327 463 - -
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 412 513 IPR011990 GO:0005515
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Pste5g02184 775 Pfam Pentatricopeptide repeat domain 142 198 IPR002885 -
Pste5g02184 775 Pfam PPR repeat family 359 403 IPR002885 -
Pste5g02184 775 Pfam PPR repeat family 533 580 IPR002885 -
Pste5g02184 775 Pfam PPR repeat family 426 475 IPR002885 -
Pste5g02184 775 Pfam PPR repeat family 223 271 IPR002885 -
Pste5g02184 775 Pfam PPR repeat family 671 718 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 620 774 IPR011990 GO:0005515
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 88 222 IPR011990 GO:0005515
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Pste5g02184 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Pste5g02184 775 PANTHER OS03G0856100 PROTEIN 514 773 - -
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 223 302 IPR011990 GO:0005515
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 321 411 IPR011990 GO:0005515
Pste5g02184 775 Gene3D Tetratricopeptide repeat domain 514 619 IPR011990 GO:0005515
Pste5g02184 775 Pfam PPR repeat 324 347 IPR002885 -
Pste5g02184 775 Pfam PPR repeat 493 524 IPR002885 -
Pste5g02184 775 SUPERFAMILY HCP-like 499 668 - -
Pste5g02184 775 Pfam PPR repeat 90 116 IPR002885 -
Pste5g02184 775 Pfam PPR repeat 639 668 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02184 Pste-Chr5 14384643 14386970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02184 428 774 Glycosyltransferase AT1G05670 25.862 2.29e-26 113