Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02163 AGACAGCAAAGTGGAAACAGACATGGATTGGCATCACAACACAAAACCATTTGTTCCTCATCCAGAGACCTTAAGCTTCTTCTACAACTATAACAACCCATATCCAGTGGAAGTGAAACAAACAACATTGGTGGAGACAGGAGAAAGGTCGGTTTCGGCAATGGATAACGGAAACAAAGAGAAGAAGAAGCGATTGACAAATAACCAGATAGAGTTATTGGAAAGGAGCTTCCAGGAGGAGATAAAGTTGGATCCTGAAAGGAAGATGAAGCTTTCAAGGGAGCTAGGCCTGCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAACTTGAGCACTTGTACGATGTGCTTAAACACCAATATGATGTCGTCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGAAGGTTATGAAGTTGAAGGCAATGCTGAGTAGAGAGCAAGGATTGGGGACGCAGACAGTTGGCGGTTATACAGAAGTATCCGGGGAAGAAACAGTAGAAAGCACGTCAAGGGGTTCCCACAAGGGACAGGGAAAGAGTAACATTGAGCAGGTTGCAGATCAAGGCTACTGTTCTTTCACTGTGGATGATTATAGCACACTCTCACTGCCTCACTGCCACTGGCCTGTTGTGCCTTATTAGTTATTATCCCTCTATTATTGTTCCACAAGTTTGAACTCTATGACTCAG 715 0.4462 MDWHHNTKPFVPHPETLSFFYNYNNPYPVEVKQTTLVETGERSVSAMDNGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKHQYDVVSNEKQKLQEEKVMKLKAMLSREQGLGTQTVGGYTEVSGEETVESTSRGSHKGQGKSNIEQVADQGYCSFTVDDYSTLSLPHCHWPVVPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02163 214 Coils Coil 108 135 - -
Pste5g02163 214 SUPERFAMILY Homeodomain-like 43 111 IPR009057 -
Pste5g02163 214 CDD homeodomain 52 110 IPR001356 GO:0003677
Pste5g02163 214 Gene3D - 45 116 - -
Pste5g02163 214 MobiDBLite consensus disorder prediction 161 182 - -
Pste5g02163 214 SMART HOX_1 51 113 IPR001356 GO:0003677
Pste5g02163 214 Pfam Homeobox associated leucine zipper 109 144 IPR003106 GO:0006355|GO:0043565
Pste5g02163 214 FunFam Putative homeobox-leucine zipper protein ATHB-51 51 114 - -
Pste5g02163 214 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Pste5g02163 214 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Pste5g02163 214 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Pste5g02163 214 Pfam Homeodomain 52 107 IPR001356 GO:0003677
Pste5g02163 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 168 IPR045224 GO:0003700
Pste5g02163 214 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02163 Pste-Chr5 14214323 14216169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02163 35 144 Homeobox Transcription Factor Family AT2G36610 57.627 7.22e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste5g02163 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02163 5 14214323 14216169 Pste5g02163 5 14214323 14216169 ECH
Pste4g02287 4 16448157 16450225 Pste5g02163 5 14214323 14216169 PCT