Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02147 CGAGTGTGCGGGACGATGGGGTGAATGGCGCGTGGGTTGGAGTGGAAGGTTTTATAGTATCGAACGGCCATGCATGCCGAATCCTCCTACACTCACTCACACACACAGCACCATCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCTTGGGTTGGCACATATCAAATAATCGTATCACAATCACACACTTTCTCTTACACTAACCTCTCGCCAAGCCCTCTCTCTCGCTCCGGTGATAATCATCCATGGCGGTTCCTCCCTCGGTCGCCGCCGCTCCGGCCTCGCTCTACGTCGGCGACCTCCACCCTGACGTCTCCGACGCCCACCTCGTCGACGCATTCTCTGACTTCAAGACTCTCGCCTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGCTACGGCTACGTCAACTTCGTTTCTCCTCAAGACGCTATTCGTGCAATCGAGACAAAGAATCACTCCATGCTTAATGGAAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCCAGAAAGAGCACTCTAGGGAACTTGTTTGTTAAGAACTTGCCTGAATCGATAGATAATGCTGGACTGCAAGATATGTTCAAAAAATATGGGAATGTTTTGTCCAGCAAAGTTGTCACCTCTGAGGATGGGAGGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATTTTCAAACGTTGCTATCGAGAAGCTGAATGGCTCTACTGTTGGTGATAAGCAGTTATACGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATATTACAGAAGCAACTCTACAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGTTTGGTTATTTCAAAGGATAACAATGGGATGTCCAAGGGTTTTGGCTTTGTGAATTATGAAAACCCGGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCTAGAGCACAAAAAAAGGCTGAGCGCGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGACAATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGGACTATAACTTCTGCCAAAGTTATGCGAGATGACAAAGAGATAAGTAAAGGGTTTGGCTTTGTTTGCTTCTCCACTCCTGAAGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTGGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAGCAAATGGCAGGACTAACTGGACCTTCAACTGCCATCATCCCTGGCGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGGTGGGCTAATGTATCAACATCTGGCAATGAGGCCAGGATGGGGGGCTAATGGCTTTGCTCCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAATAGAGGAAGATTGAATGGTTATTCTTCACAGGGAAATACTCACTCTGCTACTTATTTGCAACAAGTCCAGCCGATTTCTCAGCCAGTGATATCAAGAGAGTCAAGTACTCAGCAGAGAACCGGACAGGCTAAGTACATACCTGGTGGACGCCAACGTGACATGGATAAAGGATCCGGATCCTCATCTGGTGGTTCAAACTCTGGCAGAGGGTCCCAGGGGTCAGAGATGCTGCATAGCATGCTTGCTGGAGCTGCTCCTGAACAGCAGAAAGAGATACTCGGGGAACATCTTTACATGCTTCCTACCCTAGCAGCAAAAATAACAGGGATGCTTCTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTACTAGTACTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAACTTCCTTTCCGCTGAGGTTGCAGTGAACTGAAGACTTTTTAACCTGATGATTCTTGTTTGAGTATAGATCGTGAAGAGGATAAAAGCCTTCAAGAAGTCCGGAATTTGAGGCATGAGTTTTGGCATCAATGATTACTTTAGTGTTTCTTCTATAGTATATTTCGATATGAAAAAGTACTTTCTGTTTTCTTGCCTTAGGGTTGTCAAAATTTGGTAGTGACTATAAAAATCAGGGGCAAAATTGTTTTGAATTTTGATTACATGGAT 2366 0.4493 MAVPPSVAAAPASLYVGDLHPDVSDAHLVDAFSDFKTLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIETKNHSMLNGKAMRVMWSRRDPDARKSTLGNLFVKNLPESIDNAGLQDMFKKYGNVLSSKVVTSEDGRSKGYGFVQFESEEFSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDITEATLQEKFSSFGKIVSLVISKDNNGMSKGFGFVNYENPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGTITSAKVMRDDKEISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQMAGLTGPSTAIIPGGYPPYYYAATGVISHVPPRGGLMYQHLAMRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGRLNGYSSQGNTHSATYLQQVQPISQPVISRESSTQQRTGQAKYIPGGRQRDMDKGSGSSSGGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVLVLKNSKTKVSGQDVLHSNFLSAEVAVN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02147 628 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pste5g02147 628 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pste5g02147 628 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pste5g02147 628 CDD RRM3_I_PABPs 190 269 - -
Pste5g02147 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pste5g02147 628 SMART poly_2 548 606 IPR002004 GO:0003723
Pste5g02147 628 MobiDBLite consensus disorder prediction 439 475 - -
Pste5g02147 628 SUPERFAMILY RNA-binding domain, RBD 291 387 IPR035979 GO:0003676
Pste5g02147 628 FunFam Polyadenylate-binding protein 97 181 - -
Pste5g02147 628 FunFam Polyadenylate-binding protein 4 96 - -
Pste5g02147 628 Coils Coil 263 283 - -
Pste5g02147 628 Gene3D - 279 382 IPR012677 -
Pste5g02147 628 Gene3D - 182 278 IPR012677 -
Pste5g02147 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pste5g02147 628 PANTHER OS02G0815200 PROTEIN 190 372 - -
Pste5g02147 628 CDD RRM4_I_PABPs 293 371 - -
Pste5g02147 628 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Pste5g02147 628 Gene3D - 3 99 IPR012677 -
Pste5g02147 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Pste5g02147 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Pste5g02147 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pste5g02147 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pste5g02147 628 MobiDBLite consensus disorder prediction 518 537 - -
Pste5g02147 628 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pste5g02147 628 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pste5g02147 628 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pste5g02147 628 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pste5g02147 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 608 IPR002004 GO:0003723
Pste5g02147 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pste5g02147 628 FunFam Polyadenylate-binding protein 277 385 - -
Pste5g02147 628 Gene3D - 100 181 IPR012677 -
Pste5g02147 628 MobiDBLite consensus disorder prediction 491 537 - -
Pste5g02147 628 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 604 IPR006515 GO:0003723
Pste5g02147 628 MobiDBLite consensus disorder prediction 441 475 - -
Pste5g02147 628 SUPERFAMILY PABC (PABP) domain 540 614 IPR036053 GO:0003723
Pste5g02147 628 MobiDBLite consensus disorder prediction 491 507 - -
Pste5g02147 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pste5g02147 628 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Pste5g02147 628 Gene3D - 534 621 - -
Pste5g02147 628 CDD RRM2_I_PABPs 100 174 IPR045305 -
Pste5g02147 628 Pfam Poly-adenylate binding protein, unique domain 544 603 IPR002004 GO:0003723
Pste5g02147 628 FunFam Polyadenylate-binding protein 182 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02147 Pste-Chr5 14025951 14030497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02147 12 626 Eukaryotic Initiation Factors Gene Family AT2G36660 52.623 0.0 597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02147 5 14025951 14030497 Pste5g02147 5 14025951 14030497 ECH
Pste5g02147 5 14025951 14030497 Pste4g02254 4 16268385 16273304 PCT