Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02128 ATGGACGCCACCGTGAAGTCGGAATCCGTATCCGCGATCGTTTCGATGGATCAGCCTCGGAAAATTTCCACGGTGAATGGTTACATTGTTTACACTCGAGTCAAGAAGTCTATTGATTCTTCTGAAAACGTGGAATTGAAGGCAAACACGGAGATTGCAGTTAAACCGGAAAACAGAGACTGTAAGGAGCTGAAGAATGAGACCATGGAAGTGGTGCTGAGGGCTCACAAACGGTGCCGGCGATCAACTTGGAAAGTGAAGGTTGAGTGTTGTGATCAGACGGCGGTGAGTGAGTCGGAACAAGTTGCGAATGGTGGAAGTGAAATCAACTGTGCACTGAGGAACACGCTGGAGTTGAAGATGTTGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTTAAAGAGCTCTTCGATACTGGTTTTCTTGATGGTGTCTCGGTTGTTTACATGGGCGGCATTAAGAAGGTTCGTTTTCCTATGCTCTGCGCTTCGGGATTACGAGGTGTGATTCGAGATGGAGGAATATTGTGCTCGTGTTGTCTATGCAATGGACGCAGGGTTATTCCTCCTTCCCAATTCGAGATCCATGCCTGCAAACAATATAGGAGAGCCACGCAGTATATTTGCCTCGAAAATGGAAAGAGCCTGCTCGATCTGTTGCGAGCATGCAGGGGAGCTACCCTGCAAACTTTGGAGGCGACAGTTCAAAATTTTGTTTATTCTCCTCCTGAAGAAAGATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATTTGTGGAAACAGTTGGGCCTATATGCCGTTCTTGTGTCGAATCAAGGAAGTCTGAAGAAATTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTTGTCAGAAAGGATTAGCCGTTCAAATACTTCCAAGAATGTTTCTGTGGCTGTTCTATCCCGGAAGAAAAAATTGTCAAAGACGAAAATAAAGTCACTGTCAGTAAAGTTGAAGTCCCAGAAAAAAACTTCAAATTCGAAATCTAATAAGAGTCAGTGGAGGATAACTAAGAAGGATCAGCGATTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGTCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCGTACATTTACACATCAAATGGGGTATCTCTCCATGAGTTAGCAATCTCCCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATTTATGCATTGTTTGTTGGGATGGTGGTAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCCCTATCAAGTATACCACGTGGTGATTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTACCAATAGATGCATTCGCATAGTCAAAGATGTTGAGGCTGAGCTTAGTGGGTGTGCTTTGTGCAGGGGTATTGATTTCAGCAGATCTGGCTTTGGTCCACGCACTATAATACTATGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCAGAAGGTATTTGGCTCTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAACCTTTTGGTTAGGGGGGCCGAGCGACTCCCTGAATTTCTCTTGGATGCCATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAATCCATGAATGATATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAAGGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCTGCTATGGTTTATGGGAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATTGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCTGAACTGCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGAAGGGCTATTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACGGATAAATTTGGGTTTAGCAAGATGAAACCAGATCAGCTTACCAACTATAGAAAGAACTGCAATCAGATAGTGAGTTTCAAAGGGACAAATATGCTGTATAAAATGGTACCTCCATGTCGTGTGATCAATAATCAATCATGACATTTTTTTATATAGAAAATAGTCAATCGTGAAAGGGGATAATCCCTAGCTTTCTCGCTTCATTTTTTACTTTCTTCAGGTTTTGTGTATATATATTTATATATCAACGTTTGGCTATTTGAAGCCATTCCTGAAAGGTTCCTGCCATTTGTTTAATCTTGCATAATGCCATGTGTTCCATTCTTGGTCTCAGATAAGTG 2648 0.4233 MDATVKSESVSAIVSMDQPRKISTVNGYIVYTRVKKSIDSSENVELKANTEIAVKPENRDCKELKNETMEVVLRAHKRCRRSTWKVKVECCDQTAVSESEQVANGGSEINCALRNTLELKMLKKIVVNRKPMTVKELFDTGFLDGVSVVYMGGIKKVRFPMLCASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRATQYICLENGKSLLDLLRACRGATLQTLEATVQNFVYSPPEERYFTCKRCKGCFPSSFVETVGPICRSCVESRKSEEISNNVVGKRVRLSERISRSNTSKNVSVAVLSRKKKLSKTKIKSLSVKLKSQKKTSNSKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQITNRCIRIVKDVEAELSGCALCRGIDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGIWLCCNDCTRIHSTLENLLVRGAERLPEFLLDAIKKKQEEKGLESMNDIDVRWRLLNGKIASPETRPLLLEAVSIFHEGFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNGNHGKKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMKPDQLTNYRKNCNQIVSFKGTNMLYKMVPPCRVINNQS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02128 815 PANTHER AUTOIMMUNE REGULATOR 67 804 - -
Pste5g02128 815 ProSitePatterns Zinc finger PHD-type signature. 449 488 IPR019786 -
Pste5g02128 815 ProSiteProfiles Zinc finger PHD-type profile. 446 491 IPR019787 -
Pste5g02128 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 524 IPR013083 -
Pste5g02128 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 595 IPR013083 -
Pste5g02128 815 SMART PHD_3 536 593 IPR001965 -
Pste5g02128 815 SMART PHD_3 448 489 IPR001965 -
Pste5g02128 815 Pfam PHD-finger 449 490 IPR019787 -
Pste5g02128 815 CDD PHD1_AIRE 448 488 - -
Pste5g02128 815 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 435 512 - -
Pste5g02128 815 Pfam Tify domain binding domain 169 224 IPR032308 -
Pste5g02128 815 Pfam Tify domain binding domain 386 432 IPR032308 -
Pste5g02128 815 SUPERFAMILY FYVE/PHD zinc finger 435 493 IPR011011 -
Pste5g02128 815 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 533 595 - -
Pste5g02128 815 SUPERFAMILY FYVE/PHD zinc finger 527 590 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02128 Pste-Chr5 13789983 13798520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02128 123 812 PHD Transcription Factor Family AT2G36720 52.789 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste5g02128 TDBD 2.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02128 5 13789983 13798520 Pste4g02225 4 16113920 16125753 PCT
Pste4g01386 4 10304293 10308397 Pste5g02128 5 13789983 13798520 PCT