LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g02120	TTCCAACCTTGCAACACTGCTGCCTTTGATGACCTCTTCTCTGCATGAGAGTAAAAACCTTAAGTCCTTATCTTTCAACTTTTTTTCACCCCCATCAGTTGAAAATTCAAGGTAGGATTTTGGGTATAACAGTGATTCAACTCATCTGTGAAAAGATTGTGTTCTTTTACCCCCTGCAGTGTATCCATGTTGCCAACTTGCTCCATTGTTTTCCAAGGTAGTTAGTTAGCTTGAGTCTCTTGTTTTCATCCTCGTTGGTGGTTGGTGTGTGTGATAAATTTGAGGAACATATGCGGTTAGAGGTTTAATGGAGGCATAGGAGACTGGAGCTGGGGCCATAGCCATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTAGGGGGAGGAATGATCCTGCAGACCTGCAGCCACATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAATTCATTGAGATCAGCAACAGGAGATTTTCATCCTTCAAGCAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTATTAAGGGATGGTACTCAGGTTGCTATCAAGTCTCTTTCAGTTGAGTCTAAACAAGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATTCAAATCTTGTGGAGCTGATTGGCTGCTGTGTGGAGGGTAGTCATCGAATTTTGGTTTATGAATTTTTGGAAAACAATAGCCTTGCGAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTTCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAGCCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATAGGAAATTCAATCCAAAAATAGGGGATTTTGGTCTAGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTAGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAAGCTGATGTGTACAGTTTTGGGATTCTCATGCTCGAAATAATCAGTGGAAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAGGGAGAAAATAGGCTTTTGGACCTTATCGATTCAGAACTAGGTGAATATGATGAGAGTGAAGTGTATCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAGCAGGTATTGGAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTGACTGAGCCTGGTATATACAGATGGCACAGCACTGGAAAGAAAGGTGATTCTTTGAATGAGTCATCATCTTCTAAAGTCATCAAGTACGAAAAAACTGAAAATCCTCATGAAGCAACTTCAACCCACTTTAGTGGTACAGATATTGTGACAGATATGCTTCCAAGATGATGGTTACAACATGTGGCAATTGGCATTAGGTACATATTTGTGGAATGTGATCATATTTATAATTGTAGGTGTTAGGAATAAAGATCAATGTGTTTCCAAAGGGAAATATAAGATCAAGAGAATAAAGGCTGTATTTAATTCATGTATATATGTCTATGCCTACACATATTTTCACTTTGCTAATTATTTCTTTTTGCTGTTAAAG	1694	0.3955	MFCNWFGALNWCRGRNDPADLQPHEQVVATKKFSYNSLRSATGDFHPSSKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEIDMISNIRHSNLVELIGCCVEGSHRILVYEFLENNSLASSLLGSKSKYVSLDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDRKFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDYLVLVEWAWKLKGENRLLDLIDSELGEYDESEVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKGDSLNESSSSKVIKYEKTENPHEATSTHFSGTDIVTDMLPR	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g02120	381	FunFam	cold-responsive protein kinase 1	17	120	-	-
	Pste5g02120	381	ProSiteProfiles	Protein kinase domain profile.	45	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02120	381	MobiDBLite	consensus disorder prediction	357	381	-	-
	Pste5g02120	381	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	30	351	-	-
	Pste5g02120	381	Gene3D	Phosphorylase Kinase; domain 1	15	120	-	-
	Pste5g02120	381	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Pste5g02120	381	SMART	serkin_6	45	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g02120	381	Gene3D	Transferase(Phosphotransferase) domain 1	121	329	-	-
	Pste5g02120	381	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	121	327	-	-
	Pste5g02120	381	CDD	STKc_IRAK	64	317	-	-
	Pste5g02120	381	Pfam	Protein tyrosine and serine/threonine kinase	48	315	IPR001245	GO:0004672\|GO:0006468
	Pste5g02120	381	ProSitePatterns	Protein kinases ATP-binding region signature.	51	73	IPR017441	GO:0005524
	Pste5g02120	381	SUPERFAMILY	Protein kinase-like (PK-like)	22	315	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g02120	Pste-Chr5	13741870	13747920	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g02120	20	330	Receptor kinase-like Gene Family	AT1G56120	52.733	1.91e-106	331

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste5g02120		PK_Tyr_Ser-Thr	5.3e-45	CL0016