Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02113 TACGTGTAGCTCAAGCGAAAACTCAGGAAAACTGCCCAACACTTTTTCACATTCGTCACTCTCTCTCCTTCTGAAGCTCCTCACTTTTCTGGTTAGTTTGGTACGAGGAAGGGGTAAAACATAGTACTTGTTGGGTTTCATGCAGTTATTTCCTATAGGACTCGGACTAGGAAGAAGAAAGAAAGGTCACGGGATTTGTGAGTTTCTTAACATGTCGATAGTTATCTTGTGAAAGTTTGTAAATGGGGTTTGGTCTCAAAAGGAGGAAGAGAAAAGGAGAAGCAGAAGGAAAGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGAGTATCCAAGTGCTGGTGCCTGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTTTGGCATATGAAGATGGGAAGACAACCATATCCATTTATGAAAGAAAAGCCAGTCTAAAGGAGTTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGAAGTTGATGACCGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCTAAATGATTTCACAAGCAAAGGAAAGCTTTCTGAAATTGACATTGAGAGAGAAGAAGAGTGTGATATCTGCTTGGAGATGAATAGCAAGGTTGTATTGCCCAAATGCAATCATGCAATATGTATGAAATGCTACAAAGACTGGCATGCAAGATCTCAGTCTTGTCCTTTCTGTCGAGACACTCTCAAAAGAGTAAACTCTGATGATCTTTGGATTTACGTCAGCAGCAGTGAGATTAATGACTTGGCTTCAATTAACAAGGAGAATTTAAAAAGACTATTTGTGTACATAGAAAGTTTGCCTCTGATTGCTAGACCCTATATTCACCACGTCATATCCTCTCAACTAGTGATTGCCAATTAGTAGAAACCCATTCAAACTTGAAAAAAAAAAAAAAAATTTTATGATTCTCGGTTTGTGCAGGAATTTGTCCATTTGTAAATACATGTTTCCATGTCATCTCATTCCATATTATATACTAATTTTATTGGAATTAATTAAAG 1102 0.382 MGFGLKRRKRKGEAEGKMRKSFKDSLKALEADIQFANTLASEYPSAGACFQMRLSYSPAAQFFLFLAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITEVDDRKQKHLCATKYKLNDFTSKGKLSEIDIEREEECDICLEMNSKVVLPKCNHAICMKCYKDWHARSQSCPFCRDTLKRVNSDDLWIYVSSSEINDLASINKENLKRLFVYIESLPLIARPYIHHVISSQLVIAN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02113 239 PANTHER RING FINGER PROTEIN 41, 151 20 222 - -
Pste5g02113 239 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
Pste5g02113 239 ProSiteProfiles Zinc finger RING-type profile. 140 178 IPR001841 -
Pste5g02113 239 SMART ring_2 140 177 IPR001841 -
Pste5g02113 239 FunFam RING/U-box superfamily protein 121 187 - -
Pste5g02113 239 SUPERFAMILY RING/U-box 129 183 - -
Pste5g02113 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 188 IPR013083 -
Pste5g02113 239 Pfam Zinc finger, C3HC4 type (RING finger) 137 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02113 Pste-Chr5 13698853 13702191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02113 139 217 C3H Transcription Factor Family AT2G20030 37.500 6.13e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02113 5 13698853 13702191 Pste5g02113 5 13698853 13702191 ECH