Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02066 CCGCAAACAAATTTCCTCGAGAGCAGGGGATTCCTTCACTCCTCTCTCCTTTTCCCCTTTTCCCATCAATTAATTAATCAAAAAAGCCTCTCTACAATCATTATCCTTCACCACCCATATGTGTAACACTGTTAGCTTAATTAGGACTCACCACAACGTATTTCGGATAAAATACAATATACTGAAGAAAAGACTATCCCCTGCTTCTGTGTTCAGTGTTCACACTCAACCTCGTTGCTTATCTTTGCTTATTAATTCACCCAACCAAGCACTGGCTAACACTTTTGGACAACTTGCCATGCCACAGTAATTAACAACTCCAAGAGTGAGTGAAACTAGGAGCAGCAAAAACAAAGAAACAACCACACCGTTGATCAACAATGCTCCAAACAAGCTGCATTTTGCTACTCTCAGTTCTCAGTACCTTTTCTCCACTTGCAGCAGCAATGCTGAACCTGAACCTAACTCTTCCGGGAGCACATCCAGACCCGGAAGCTGTTGCCCGCGAAGTTCACAGGAAGGTTAATGGTTCAATAGCAAGAAGGGAAATGTTAGCAGTGTCAGGGAAAGACGAGTCAGGGTGTCTAACGGGTAACCCAATCGATGATTGTTGGAAATGTGACCCAGATTGGCCGAATAACAGACAGAGGCTAGCTGACTGCGCCATTGGGTTTGGTCAGTATGCAAAAGGAGGGAAAGGTGGAGAGTTCTACGTAGTAACAGACTCCTCAGATGAAGACCCTGTGAACCCAAAACCTGGCACTCTCAGATACGCAGTGATACAGAACGAGCCGCTGTGGATCGTCTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAACTCATTTTCAACAGTTACAAGACCATAGATGGACGCGGCGCTGATGTGCACATTGTGGGAGGAGGCTGCATCACTTTGCAATATATAAGCAATGTTATCATACACAACATTCACATCCATCATTGTCATCCCTCAGGGAATACAAACGTACGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAATCGGACGGAGACGGGATATCGATATTCGGTTCGAAAGACATATGGATCGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTGATAGACGCGGTGATGGGGTCGACGGGGATAACGATATCGAACAACTACCTATCACACCACAACGAGGTGATGCTCCTCGGGCACAGCGACGACTACCTGCCGGACTCGGGCATGCAGGTGACGATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGCATGCCACGGTGCCGGAGGGGTTACATCCACGTCGTGAACAATGACTTCACCGAGTGGGAGATGTACGCCATCGGGGGCAGCGGCGACCCCACCATCAACAGCCAGGGTAACCGCTACATGGCACCCCAAAACCCCTTCGCTAAAGAGGTTACCAAGCGAGTCGACACTCAACAGTCCAAGTGGAAGGGTTGGAACTGGAGATCCGATGGGGATATTCTCCTCAACGGTGCCTTTTTCGTCGCTTCTGGTCAAGGTCTTGAGGTTAAGTACGAGAAGGCCTACAGCGTCGAACCTAAGTCCGCCGATCGTATTTCTCTTCTCACCATGTCCGCCGGTGTTCTCGGCAATGCCAGGGACAACAACCTTGGAATGTGGACCCGAGGAGCACAACCCCATGACTCTGACTCTGGAATCGAATACACCGACTACACTGATGAAATCTCCCTCACTCCCACCATCCTTTTCCCCTCTTCTTTTCTTCTCCTCTTCCTCATCTCTTCCACCCTTCTTTTTCTACTATGACAAATCTAACCAACCATCAGCTTCCTGCGTCCGCCATGTAACTTGACGTTCTTTCATTCCAATCCATATCTTCAATATTGCCTCCTTCTCAACTCAACTATGGATCCGATCATGTTAAATTATCTTCACTTTCACTTTTCAATTGCTTCCTC 1948 0.4861 MLQTSCILLLSVLSTFSPLAAAMLNLNLTLPGAHPDPEAVAREVHRKVNGSIARREMLAVSGKDESGCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGDPTINSQGNRYMAPQNPFAKEVTKRVDTQQSKWKGWNWRSDGDILLNGAFFVASGQGLEVKYEKAYSVEPKSADRISLLTMSAGVLGNARDNNLGMWTRGAQPHDSDSGIEYTDYTDEISLTPTILFPSSFLLLFLISSTLLFLL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02066 471 FunFam Pectate lyase 71 413 - -
Pste5g02066 471 Pfam Pectate lyase 155 327 IPR002022 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Pste5g02066 471 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Pste5g02066 471 PANTHER PECTATE LYASE 18-RELATED 32 414 IPR045032 GO:0030570
Pste5g02066 471 SMART amb_all 146 343 IPR002022 -
Pste5g02066 471 SUPERFAMILY Pectin lyase-like 68 399 IPR011050 -
Pste5g02066 471 Gene3D - 71 413 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02066 Pste-Chr5 13282687 13285709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02066 1 465 Polysaccharide Lyase AT3G53190 74.735 0.0 691
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02066 5 13282687 13285709 Pste5g02066 5 13282687 13285709 ECH
Pste5g02066 5 13282687 13285709 Pste4g02155 4 15696047 15696691 PCT