Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02039 TTTAAACGGTCATCCTCCTTGTGTCGTTTTTAGGATTGGACCTCAGTTTGACTCCCGCAATGTCTGAATTTCTGGATTACGACGAAAACGAAGAAATGGCACTGCAACAATCTCTTAGGGAAAATGAAAATGCGGCAGAGTATGGAGGCACCGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGACGAAGAGTATGTTCCCATTGTTGTGGCCTCTCCTAGGGTTTCCCACGACGCTCCTCCTGTTCTTACATCTGATAGCGTAATCGTTATCCCCGACGATTCGCAGAATTGCGTGGAAGAAGAGGGGAACAAGCGCCGCAGAACCGAAGGAGGCGAGGCTTCTTGTTCCGTCGCCAATGGGAGCCAAGACAACGACTGGAACCGCACCGACGTTGACGGTCTCTTTTGCCCTATTTGCTTGGACGCTTGGACCAGTGATGGCGAACATCACATATGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGCATCAAAAAATGGCTTCAACAGCGCAAAAAATCCGGGAAGTGTCCTCAATGTAATATGAAATGTTCGCTGAAGGATGTGAGGAAACTGTATGCCACTCGAGTAGTTGCTGTTGAGGAGGAATCTCAGAAGAGAATTCGGTCACTCGAGGCCAAATGTGCTGCTCTTGAAAATAAGGGCAGTGATTGGCACAAGAAAGAAGCCAGATGGCATAAGCAAGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACAGAGAGAAACACTTACTTGGAGCGGATGCTACGAGATATGCAGAGCAGGCAATCTGCATTGATAATTGGCAATGGAAACTCTCAATGGAGATGTGGATCTGAGTACAACTTTAGCCAAAAATACCATGTGAAGGGATCCATTTGCAATGTTGAATTGCAGAAAATGCTTCATCTGGATGGTGCACGTGTTTTTGATATGGACATTTCTAATCAAATTTTATTAATTGCAAGAAAGCCGAAGGCAGTAGGTGGAATTCACATGCTAACTAAAACAAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTTCCTTCCCATACAAATGGTGTTAGAGACCTACATATTTCTCCTTCTGATAGTAGCCAGGCCCTCTTTGCTTCTTTAGGAAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTATCAATTATGATCTACAGGATGCTGCATGGTCTTGTTCATGGGATCTCAACAATTCGCATTACATATATGCTGGACTACAGAATGGTTGTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCTTTAGTTGGTTTGACTAGCAACCCTGTACATAGTGTACATTCTCTTGCACAAACTTCAGGTTTTTCTTCTGGTGTTAAAACCGTCCTATCTGCATCTGCTATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTTTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATTCGACACGTCCATGGATGTGAGTCTCTCTCAGCCATCACCCACTCCTCTTAGTCCTGGATACGGAGTACAGGGCACTCATGTCTTGTTTAATAGAATGGGCAGTCATCATTTCCAAAAAGTGGGTTCTTCATATGCTAATGTAAGTAAAATTCGACTACCAAAATGTGTAATTATGGACATAGAGAATCAGAGCAGATTGTTTGCATCTGGGGACGAAGTTACATGTGATTTAGTCTTGCATGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATGCCTGCTCAAGCTCGGGATCTTAGGTACTCACCTAGCCATGGAATACTTGGTTGTTTGAGCGAGAACACATTGCAGCTTTTCTATTCCAAACACACTCAGGGAATGTAATTCTATATTTCGCAATTGCAGTATCAGGGCAGCCCTTCTTTCAAGAAGGGGGATTGTCGGCGTTGATTTTTTTCCCCCTGATCTAATAAGTTATTCTACCTTAGAATTTTAGCTGCCCTTAAATTATTTGAGATCGTAATTGTTATTTCTCTTCCCCGAGCCTCTGAATACTTGATTCATTTATTCCTAATGATTTTGTAGCGATTTTTTCTTGTGTTTGTAATAATTTATGTACTGGAGCAGAAATGTTGATATTGATATTATGTAAGGATAAGATAATTCGTTGTCTTTAATAATAAAC 2247 0.4263 MSEFLDYDENEEMALQQSLRENENAAEYGGTDEDEDEDEDEDEDDEEYVPIVVASPRVSHDAPPVLTSDSVIVIPDDSQNCVEEEGNKRRRTEGGEASCSVANGSQDNDWNRTDVDGLFCPICLDAWTSDGEHHICCLPCGHIYGMSCIKKWLQQRKKSGKCPQCNMKCSLKDVRKLYATRVVAVEEESQKRIRSLEAKCAALENKGSDWHKKEARWHKQEAALNLQVQKLTERNTYLERMLRDMQSRQSALIIGNGNSQWRCGSEYNFSQKYHVKGSICNVELQKMLHLDGARVFDMDISNQILLIARKPKAVGGIHMLTKTSLMSPFEMQDILLPSHTNGVRDLHISPSDSSQALFASLGKKLSVLSLDSGNLVINYDLQDAAWSCSWDLNNSHYIYAGLQNGCVLVFDMRQTAGPMKSLVGLTSNPVHSVHSLAQTSGFSSGVKTVLSASAIGLCQWNIDSEERPLMVPETDNQGVCISLAYCPSSDDIVASYRPKFDTSMDVSLSQPSPTPLSPGYGVQGTHVLFNRMGSHHFQKVGSSYANVSKIRLPKCVIMDIENQSRLFASGDEVTCDLVLHELPSFRVLQQFKMPAQARDLRYSPSHGILGCLSENTLQLFYSKHTQGM 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02039 628 ProSiteProfiles Zinc finger RING-type profile. 120 166 IPR001841 -
Pste5g02039 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 176 IPR013083 -
Pste5g02039 628 Coils Coil 186 206 - -
Pste5g02039 628 MobiDBLite consensus disorder prediction 1 64 - -
Pste5g02039 628 MobiDBLite consensus disorder prediction 81 95 - -
Pste5g02039 628 SUPERFAMILY RING/U-box 110 172 - -
Pste5g02039 628 CDD mRING-C3HGC3_RFWD3 116 178 - -
Pste5g02039 628 SUPERFAMILY WD40 repeat-like 336 620 IPR036322 GO:0005515
Pste5g02039 628 MobiDBLite consensus disorder prediction 78 101 - -
Pste5g02039 628 Gene3D - 177 506 IPR015943 GO:0005515
Pste5g02039 628 Coils Coil 228 248 - -
Pste5g02039 628 MobiDBLite consensus disorder prediction 28 49 - -
Pste5g02039 628 SMART ring_2 120 165 IPR001841 -
Pste5g02039 628 PANTHER RFWD3 PROTEIN 16 621 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pste5g02039 628 Pfam Ring finger domain 120 166 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02039 119 171 C3H Transcription Factor Family AT1G51930 40.741 4.37e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02039 5 13059653 13068595 Pste5g02039 5 13059653 13068595 ECH