Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g02011 ATGCGTTCAATCTATCAGGGGTGTCCCGTTGGTATTCGTTCAGGTGCGAGCATCAGCACCCTCCTGAAGGCCTGCAAGAACAGCGAACAGCTCGAACAAGTGCACGCCTGCATCATCCACCGAGGCCTCGAGCAAGACCATTTCCTCATTTCCCTCTTCATTTCCCACGCTCACGCTCACTCTCTCTCTTACTCCCTCTCCGTCTTCCACCGCGTTCTCTCCCCTTCCACCTTTCTCTGGAACACTCTCATCAAATCCCACTGCCACAACACCTTCTTCTCCCACACCCTCGCCGCCTTCTCTCGCATGAAGGCTCATGGCCCTCTTCCCGATTCCTTCACCTACCCTTCTGTCATCAAGGCCTGTTCCGCCATCTGCTTGCCCCGCCTAGGAAAATCCCTCCATGCCTCCGCCTTCAGGTCCGGCCTCCACCACGACCTCTACGTCACCACCAGTTTGATCGACATGTACGCCAAGTGCGGTGAGATTGCTGATGCTCGCAAACTGTTTGATGGAATGTCTCATAGGAATGTCGTTTCTTGGACTGCTATGCTTGTTGGCTACCTTGCTGTTGGGGATCTTCTGCAGGCCCAGAACCTTTTTCATCACATGCCGGATAGAAATGTCGCTTCTTGGAATGCGATGATGCAGGGTTTTGTCAAGCTGGGGGATTTGACTGCTGCTAGAGCTCTTTTTGACGCTATGCCTCGGAAGAATGTTGTTTCTTTCACCACCATGATTGATGGGTATGCTAAGGCCGGTGACATGGCCGCCTCCAGGTTCTTGTTTGATTCTGCTCCCAAGAAGGATCTTGTTGCTTGGTCTGCTTTGATTTCGGGTTATGTTCAGAATAGGCTGCCTAATCAGGCTTTGAGAGTCTTTTTGGAGATGGAATCAATGAATGTGAAGCCTGATGAGTTCATATTGGTTAGCTTGATGTCCGCTTCCGCTCAATTGGTGATACTTTATTGTGATCAAATCAATGTTGCTGTAATGTTTGATTTTCGTGGTGATGTTTTGTGGTATACGAGAGTTGGTGTTGTTGACTGTAATACAGAGAATGGAGGAAAAGGTTTTACTGATTCATATTCATCTATTCTTTTCTGA 1107 0.4905 MRSIYQGCPVGIRSGASISTLLKACKNSEQLEQVHACIIHRGLEQDHFLISLFISHAHAHSLSYSLSVFHRVLSPSTFLWNTLIKSHCHNTFFSHTLAAFSRMKAHGPLPDSFTYPSVIKACSAICLPRLGKSLHASAFRSGLHHDLYVTTSLIDMYAKCGEIADARKLFDGMSHRNVVSWTAMLVGYLAVGDLLQAQNLFHHMPDRNVASWNAMMQGFVKLGDLTAARALFDAMPRKNVVSFTTMIDGYAKAGDMAASRFLFDSAPKKDLVAWSALISGYVQNRLPNQALRVFLEMESMNVKPDEFILVSLMSASAQLVILYCDQINVAVMFDFRGDVLWYTRVGVVDCNTENGGKGFTDSYSSILF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g02011 368 FunFam Pentatricopeptide repeat-containing protein At2g20540 87 232 - -
Pste5g02011 368 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 240 316 IPR046960 GO:0003723|GO:0009451
Pste5g02011 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Pste5g02011 368 Pfam PPR repeat family 75 122 IPR002885 -
Pste5g02011 368 Pfam PPR repeat family 269 307 IPR002885 -
Pste5g02011 368 Pfam PPR repeat family 207 252 IPR002885 -
Pste5g02011 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Pste5g02011 368 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Pste5g02011 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Pste5g02011 368 Gene3D Tetratricopeptide repeat domain 128 226 IPR011990 GO:0005515
Pste5g02011 368 Gene3D Tetratricopeptide repeat domain 228 328 IPR011990 GO:0005515
Pste5g02011 368 Pfam PPR repeat 151 177 IPR002885 -
Pste5g02011 368 NCBIfam pentatricopeptide repeat 241 270 IPR002885 -
Pste5g02011 368 NCBIfam pentatricopeptide repeat 272 306 IPR002885 -
Pste5g02011 368 NCBIfam pentatricopeptide repeat 151 178 IPR002885 -
Pste5g02011 368 NCBIfam pentatricopeptide repeat 211 241 IPR002885 -
Pste5g02011 368 NCBIfam pentatricopeptide repeat 79 111 IPR002885 -
Pste5g02011 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g02011 Pste-Chr5 12769567 12771842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g02011 17 319 Glycoside Hydrolase AT3G49170 24.843 2.64e-30 120