Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01994 TTAAACTCCTTCTTGCAAAAGGGTCCTTATATATGGTGGTAGAAACTTCTACAGGCTTATGAGTGATATAATTTTGGAAACTGATAAGACAATTGAAGTTACATAGGCTGTTACCTTTGACTTATGCCATTTCTTCTCTGAATAAACTTCTATTGATGCCCCGCTCCACTTTCCATTCTTCAGTATCCTTGTAGTTTGTTCCTTCCTTAGACTCCCTCACTTGAGAAACCAAGGAGAAAGAGGGAGATTGAGAGAAAGAGATGGGCAGAGCTCCTTGCTGTGACAAGGCAAATGTTAAGAAAGGACCATGGTCACCAGAAGAAGATGCAATGCTAAAGGGGTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCACAAAAAGTTGGATTGAAAAGATGTGGCAAGAGCTGTAGACTAAGGTGGCTTAATTACCTCAGACCCAACATTAAGCATGGTCAATTCTCTGATGCAGAAGATAAAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAGAAAATGATGGCTATGAATCCTTCACCCCAAAGGAAGCCTCAACAAATTACCCTTTTATCCATCCTTCAAAGCTCAACATCATCTTCCCCATTATCGTTCAGAGACATCAACAACACCTCATACTACCACCCTCACGGGTCTTTCACAGGCTCCGGGTCCTTTTCCTACTCATCAAGACTTCTCAGCGGAAACAACTCTTCTGCTTCTGCTGATTCATTCTTTCAAGTACAAGAGAGTTTCATGGACCCCACTCAGAACTGCCAATTCAAAGATACAAGCAATAATAGCGTGTTTGTGTTTGGTAGTGAAGCCACAGCCACTAGTTGCAGCTCTTCTGACGGGAGCTGCAACAACCAGATCAGCCATGAGTTCGGTGATGCAAGTTTTGTTGAACAGATAGGTGGGGCTAATAATCACTTCTGCAGTGGGGTGGAAGACACTACTCACAAGTTAATCATGTTCTCCAATGCTGCTAGTGCTAGTGTTAGTGGTTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCATTGGATTACGGTCTAGAGGAAATTAAACACCTAACTAGCACTAACAACAGTTGCAACAGCTTTTTGTTTGATGACAAGAAGACAGAAGAAAGAGTCACGTACTACTGATGCTGACTGTGGTTAAAATTAAGATTCGAAGGGGATAAGTAGAAACTTGTGACTTGGACTCGGTTTGTTTGTGCCTTTGTGGGATGGGATTTTAGTTTTTACTTTTTAGTATCAACAGAATTACTTTCTTTGTTTGAAAGTACATTGTAAAAGTTTCCTTTTGCCAAGGTAACCCTACCCGTTCAAAGTTCAGACCATACACATGTCCAACAAACAAATGAATGAAGAAAAAAAACAGAGGAATCAGGAAGCCTTGACACTCAACTAGAGTACCCTGTATCATAAAGAGGCTTGCAACACCCCAGTCATGCCACTAATATTTTTCGTGTATCGCATGCATTATCTAATATTATATTTCACACTTTTCCCCCCATAAAGTCAATCATGCACCTAAAAACATAAAGATCAATGTGCTTATTG 1664 0.4105 MGRAPCCDKANVKKGPWSPEEDAMLKGYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSPQRKPQQITLLSILQSSTSSSPLSFRDINNTSYYHPHGSFTGSGSFSYSSRLLSGNNSSASADSFFQVQESFMDPTQNCQFKDTSNNSVFVFGSEATATSCSSSDGSCNNQISHEFGDASFVEQIGGANNHFCSGVEDTTHKLIMFSNAASASVSGWTDKQNGLWEQNPLDYGLEEIKHLTSTNNSCNSFLFDDKKTEERVTYY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01994 327 CDD SANT 71 113 IPR001005 -
Pste5g01994 327 Gene3D - 7 68 - -
Pste5g01994 327 SMART sant 67 115 IPR001005 -
Pste5g01994 327 SMART sant 13 64 IPR001005 -
Pste5g01994 327 PANTHER OS09G0431300 PROTEIN 1 297 - -
Pste5g01994 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pste5g01994 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste5g01994 327 CDD SANT 16 62 IPR001005 -
Pste5g01994 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste5g01994 327 FunFam Transcription factor RAX3 7 68 - -
Pste5g01994 327 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pste5g01994 327 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pste5g01994 327 Gene3D - 70 133 - -
Pste5g01994 327 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pste5g01994 327 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01994 Pste-Chr5 12669118 12671224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01994 1 119 MYB Transcription Factor Family AT5G57620 84.874 4.03e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g01994 Myb_DNA-binding 3.5e-13 CL0123