Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01988 CTTGTCTCCTCTCCTTATATCAAATCCAAGCAAGCTTTTCTTCATTGCCATCCCAATTCCAAATTACATCTTTTCACTCACCTTGTTTCCAACAATAACAATAACAGTAACATGACCATGGGTGATTTTAATAACTGGGGAGCTTCTGAACTTAATCATAATCAAGTTGGACTTGATGTTCCCAAATTCAAGTCTGCTCAACCTCCTTCACTACCCCTCTCTCCATCTCCAGTCTCCCCTTCTTCTTACTTGGCCTTCTCATCTGCTTTCAGCCCATCTGAGTTCTTGAACTCACCTTTGTTTTTTGCTTCTCCAAATGCAAGTGTCACTAATTGTGGTATTTTCTTTGTTGTTATGTGTTTGATTTTTGCATCTCCTACTACGGAGGCTTTGGTTAGCCAGAGTTTCAACTGGAGGAACAGTTCAGGGGAAGAACAACAATGTGACAAGGAGGATGAGAAAAACTACTCTGACTTCTCTTTCCACTCCCAAATTCAATCTTCCTCAAGCATGTTTCAAGAGGATCCACTTAAGAAACAAGACATATGGAAATTCAATGAACCTACAAAGCAAACTGATTTTTCATCTGAGAGGACAGCAACAAAATCCGAATACCCTTCAATTCATCGCTTTACCTCAGAAATGTCAGCAGGAAAACCAGAAATGCAAAGTAATTCAGTTCCTCAGTCTGGATATTTTGACTACACGAATGCATCTCAGCCTGTTAGAGAACAAAAGAGATCCGAAGACGGGTTCAACTGGAGAAAATATGGACAAAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTAGAGAAGTCTTTGGATGGACAAATTACAGAAATAGTATACAAGGGCGAACATAACCACCCAAAACCACAGTCTACTAGAAGAACAAACTCTCAATCAATTCATCAACCTTCTTCATCTTGCACCAACTCAGGGATTTCTGATCAATCAGTGGTGACCCTAGGAAATCCACAAATGGATCGTTTCTCTATACAAGAAGATTCTTCAGCTTCTGTTGGAGAGGAAGAGTTTGAGCAAACATCCCAAACCAGTTATTCTTTGGGAGATGAAAATAACCTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGAAAATGATGGCTATTCTGCCTCAGGGACTAGAACTGTTAGAGAGCCTAGAATTGTAGTTCAAACCACAAGTGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAAAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCACCTGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCTGCACATGACATCAAAGCTGTGATCACAACTTACGAAGGGAAACACAACCATGATGTACCCGCTGCACGTGGTAGTGCAGGTTATAACGCGAACAGAAATTCTCAGAACAGCAACATACCAGCACCTATAAGACCCTCAGCAGTGAACTGTTATTCTAGCTCATCAAGTTTTACAAATTCTCTTTGCAATAACAGCAGGATCCCAGCAACTGGAAATCAAGAATCATTTTCACTGGACAAGTTCAAGAGCCCTGGAAATTTTGGATATTCAGCTCTTAACAGATTAATGGGTTCACATACCAATCATACACAATACACAGATGCTTCATACCCAAAGGCCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTCTCAAAGGACTTATGAATTTGGACTGGACCACAACTTTACATATAATCTTGGATATGTTTTGTATAGCATGTAGGATTTTAGTTTTTTACAGCAGAATATAGACAAATTGCAAATGTTTACTTATTTACCTCATTTAGATTAGTGACTGGCACTAAAGCCATACGACAGCGTATTTCTTTTATACCTGTCTGCCAAGTTCATCCTCCAATAGAAACTTTCAACTTTATCATAGCATTCACTGATGAATTCTGTTATTCTTTTGTTGTATTTTTAGGGAAAAAAGTTATTCTGGAAGAATTCGGTAGCATGTGTACTTGTGCTGGCAATTTCTACTATGCTCTTTGGGCTTTTAGTTTTTATTAAGTTGTTTGTGAATTATGATGAATATCACGAGGTATTGGACTTC 2158 0.3902 LVSSPYIKSKQAFLHCHPNSKLHLFTHLVSNNNNNSNMTMGDFNNWGASELNHNQVGLDVPKFKSAQPPSLPLSPSPVSPSSYLAFSSAFSPSEFLNSPLFFASPNASVTNCGIFFVVMCLIFASPTTEALVSQSFNWRNSSGEEQQCDKEDEKNYSDFSFHSQIQSSSSMFQEDPLKKQDIWKFNEPTKQTDFSSERTATKSEYPSIHRFTSEMSAGKPEMQSNSVPQSGYFDYTNASQPVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGEHNHPKPQSTRRTNSQSIHQPSSSCTNSGISDQSVVTLGNPQMDRFSIQEDSSASVGEEEFEQTSQTSYSLGDENNLGPEAKRWKGDNENDGYSASGTRTVREPRIVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSAGYNANRNSQNSNIPAPIRPSAVNCYSSSSSFTNSLCNNSRIPATGNQESFSLDKFKSPGNFGYSALNRLMGSHTNHTQYTDASYPKAKDERKDDSFLQSFLSKDL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01988 588 MobiDBLite consensus disorder prediction 349 374 - -
Pste5g01988 588 MobiDBLite consensus disorder prediction 298 336 - -
Pste5g01988 588 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 Pfam WRKY DNA -binding domain 418 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 MobiDBLite consensus disorder prediction 237 270 - -
Pste5g01988 588 MobiDBLite consensus disorder prediction 309 336 - -
Pste5g01988 588 MobiDBLite consensus disorder prediction 349 398 - -
Pste5g01988 588 ProSiteProfiles WRKY domain profile. 412 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 ProSiteProfiles WRKY domain profile. 243 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 128 494 IPR044810 GO:0003700
Pste5g01988 588 FunFam WRKY transcription factor 237 308 - -
Pste5g01988 588 SUPERFAMILY WRKY DNA-binding domain 409 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 FunFam WRKY transcription factor 33 404 470 - -
Pste5g01988 588 SMART WRKY_cls 417 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 SMART WRKY_cls 248 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 Gene3D WRKY domain 404 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste5g01988 588 Gene3D WRKY domain 234 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01988 Pste-Chr5 12600695 12603652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01988 58 584 WRKY Transcription Factor Family AT2G38470 45.221 1.14e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste5g01988 WRKY 1.2e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01988 5 12600695 12603652 Pste5g01988 5 12600695 12603652 ECH
Pste5g01988 5 12600695 12603652 Pste6g00442 6 1658626 1662353 PCT