Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01940 TTAGTGAGGGTTTCCGCGCCTGACTCTCTAAGGCATTTTGGCATTTGCTTCCTCCGTTCCTCAGTCATTCTATCTTCGTCTTCCTCTTCCGCATCTGCTAGAGGCGTCTTCGCCACATTCGATTTGGATTTGCCCCTTCCTTTTGCGATTTGTTCTTCTTCGCCTTCGACTCTTCATAAATTCGTCCCTTTGGAGCTCTTCCTCTCTCTCTGGTCGCTTCGTCTCATCCCCTCCGCTCCATTCTCATTAGACGGAACGATGGCGGTGAAGAAGCATAGCCAGGGAGTGAAAAATGATGGTAATGGTGCCAACAGTGATGTTTTTGCTTCGTGCTCATTCTCCAGCCTTGGCCTTGATTCCAATTTATGTGACCAACTTTGTGAGAGGTTGGGGTTTGAAGTTCCGACGCAGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCGGGCCGTCATGCTTTGGTAAATGCTGCAACGGGAACTGGGAAGACTGTTGCGTATTTGGCTCCAATTGTTCATCACTTGCAAGGTTATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCTTGTACTCAAATCTGCGCTGGATAATTTTTGACGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACAGGGCATGATGAACAAGAGAACACAGTTCCAAGACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCCAAAATTAGTCTAGACAATCCAGTTATGATTGGTCTTGATGGTAAGAAAATTGAACCAATTTCAAGAATTGAAAGCTATGATCATTCAGCATCTGATGAAGATAATGAAGATATGAATTCCAGTAAAATACCAACTGTAGGAGATTACAAAGTCCCCATACAGTTGATTCAGAGATACATGAAAGTTCCTTGTGGTTCACGGCTTCCTCTACTTCTTTCGATTCTAAAGCATCTCTTTGAAAAGGAATCTTCACAAAAGGTTGTTGTATTCTTTTCTACATGTGATGCAGTAGATTTTCACTATTCACTGTTAGGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGATCCGACAGCAGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCTTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACAGAATATGTTCATAGAGTTGGTAGAACTGCTCGCCTGGGGGAAAGAGGAGAGTCATTGTTGTTTCTGCAACCAGTTGAGATAGACTACTTACAGGACTTGGAGAAACATGGTGTCTCACTCATAGAGTACCCTGTCCTCAAAATGTTGGATAGTTTTCCACTATATGGACAAAAGAACCTTGCAAAGAAGTCTGTTTTCTTAGAGTCGCATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGCCCGAGATGGATGAACTTGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCCAAAAGCTTTGCATTAAAACAACAACCTTCTTTAGTTGGACAGTCATTCCAAAAGCTGATTAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGTTGTCAAAAAAGAGAAGAGTTGCAAGTGTGACAAAATGCAGACCATGAAAGTGGCTGATGGTGTAAGTTTCATGAAACAGAATGATGGTGATGGTGACATGATGGCTAAATGGATTAGGAAGTGCAATCTCATGTTACGTGCTTCTCACTAAATCTACAGAGGAACATGTTTGCAACAGGGCGTAATCATACTACTATTCTTCATGATTTTATCAGTTATTTGAGAGGGTAGCAAAAGGGGTAACGGATGATCAGTCTTGTAACAGTTTAAAGAGGAGTTTGATGGGTCTTATTAGGAGTCTAAAGTTTATGATTCGATTAATGTTGTTCAGTTACATATTTATAGTGCATGCTAAGATTTGGTATTAATAGACATGAAGACATTGTTTTATGATGTGCTGGACTACACAATAATAGGAAGACACAATGAACATTTGCAGCATCTAGAATGAGC 2461 0.4092 LVRVSAPDSLRHFGICFLRSSVILSSSSSSASARGVFATFDLDLPLPFAICSSSPSTLHKFVPLELFLSLWSLRLIPSAPFSLDGTMAVKKHSQGVKNDGNGANSDVFASCSFSSLGLDSNLCDQLCERLGFEVPTQVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIVHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKTGHDEQENTVPRHSKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKKIEPISRIESYDHSASDEDNEDMNSSKIPTVGDYKVPIQLIQRYMKVPCGSRLPLLLSILKHLFEKESSQKVVVFFSTCDAVDFHYSLLGEFQFSSYPQTEGIRQQFLGCKTFRLHGNMVQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLIEYPVLKMLDSFPLYGQKNLAKKSVFLESHPWVLCLQKALEAFIMSKPEMDELARKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKLIKKRKRFEKKNGLSKKRRVASVTKCRP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01940 684 CDD DEADc_DDX31 122 340 - -
Pste5g01940 684 SMART ultradead3 131 355 IPR014001 -
Pste5g01940 684 Pfam DEAD/DEAH box helicase 136 327 IPR011545 GO:0003676|GO:0005524
Pste5g01940 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 339 IPR027417 -
Pste5g01940 684 CDD SF2_C_DEAD 384 533 - -
Pste5g01940 684 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 140 IPR014014 GO:0003724
Pste5g01940 684 Gene3D - 395 678 IPR027417 -
Pste5g01940 684 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 563 IPR001650 -
Pste5g01940 684 Pfam Domain of unknown function (DUF4217) 588 648 IPR025313 -
Pste5g01940 684 FunFam RNA helicase 82 341 - -
Pste5g01940 684 SMART helicmild6 442 524 IPR001650 -
Pste5g01940 684 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 339 IPR014001 -
Pste5g01940 684 PANTHER RNA HELICASE 109 596 - -
Pste5g01940 684 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Pste5g01940 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 575 IPR027417 -
Pste5g01940 684 Gene3D - 85 342 IPR027417 -
Pste5g01940 684 SMART DUF4217_3 586 651 IPR025313 -
Pste5g01940 684 Pfam Helicase conserved C-terminal domain 402 524 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01940 Pste-Chr5 12290574 12306895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01940 112 561 Eukaryotic Initiation Factors Gene Family AT3G19760 23.725 1.04e-31 126