LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01938	CACCAAAACACTGAAATGAACCAACAAGAGGGTGGACTTGTCTTACCCCTTTTACTTTAATTCACTCACAACAAGGGCAAAGAAAAACAAAATGAACAAATACTCTTGTGTTGTTTTTCTTTCACTGCATGCGATGATTTCGCTTCTTAATCAGTAGACGCGAGATTTTGAGGTTGTCGTGAAGCCAAGTCCATGGCAATGCAATTCGTTCTCCTTCTGCTCCCTTTGCTCGCTGTTGTTGTTCATGGACTCGCTTCCAATGCGACACTGAACGAGACTTGTGGGTACTTCGATGGTTGTCTCAATAGAGATCCTAAAGTACCTTGCCCAATTGGTTGGGTTATGAACCCTAACAAGACCACATGTTTTCTCCATGTGGGGAGGTCTCAATCTTGGAATGACTCTGAGACCTGTTGTAGAAAGTATGGTGGACATTTAGTGTCATTGACATTGCTTCAGGACCTACAATTTGTTCAGAGCCTATGTGGTGAATCTATAAATAGTTGCTGGATTGGTGGGCGAAAACTAAACTCTACAGTTGGTTATCAGTGGATGTGGTCTGACAATTCACCATGGAATAACTCCATGTTTTCTGTTGACGATGTTTCACCCCATTGTAATGGAACTAGTCTATCCTGTCATAGGAACAGTACAGACAATTTATGTACAGTAGTGACTAATAATTCAAACTCTCTTGTTGCTGAAAGATGTGATAATCCTCATGCTTCTCTATGTATACTTGATATAGATACAAAATATAATATGCACCGCCGCAGGGAATACCTTATCATCCTTGCAGTGGTGAGTGCCTTGATACTCTCCACAACATTAGCAGTGGTAGTTTGGCTTCTTGTATATAAGCGAGGCAAGAAAAGAAGGCGATCTAGAAAACTATCTATTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAATTAAGGTCAACTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATACTAAGACTGGTGGTACATACAGTGGGGTTTTATCTGATGGTACCAAGGTTGCAGTTAAGAGATTAAAAAGGTCAAGCTTTCAAAGGAAAAAGGAGTTCTACTCTGAAATTGGCAGGGTTGCTAGGCTTCGTCATCCAAATCTGGTGGCTGTGATGGGATGTTGCTATGATCATGGTGATCGCTACATTGTGTATGAATTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGACGTAGCTTAGATTGGACTATGAGGATGAAAATTGCAACGACACTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTAGTGCATCGAGATATATGCGCTAGTAATGTACTGCTGGATGAGGAGTTCGGAGCACACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATATGAGGTAATGCATGAGAGGACTGTAATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACAGAAACGAGCTTACAACGAAGAGTGACGTTTATAGTTTTGGTGTGCTACTACTTGAAATAGTAAGTGGACGAAGACCTACACAGGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCAACACCTCTTGTTCAAGCTCATCGTTATCATGAACTCTTGGATCTTCACATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGATCTTGTTTATTCTTGCACACAGCATGTCCCTTCTATGCGCCCAAGAATGTCTCATGTTGTTCACCAGCTGCAACAGATTGCTCAGCCACCTGCAAAGTAAAGCTAATCTAGTAGTAGTCTTGACTTCAACTTTCTGTATCTATAACTTCAAAGTGGAGGGAAATTTTTGTTTTACGTGACAGTATTTGATAGCTGCAACAGATTGCTCAGATCTTGTTTATTCTTGCACACAGCATGTCCCTTCTATATGTATGTACTTTAACCTGCCCTTCTTTAGGGTCAAAACTAAATCAAGTTTAAGCTAGAGGCAGCTGTGGCAAATTCTGCGAGACCATACTTGTAGATGTAATTGTACTATTGATGGATTTGTACCCACTTAATCATTCTTAGCAAAAATGTAACAGAAAACTGAACTGTGA	2152	0.4136	MAMQFVLLLLPLLAVVVHGLASNATLNETCGYFDGCLNRDPKVPCPIGWVMNPNKTTCFLHVGRSQSWNDSETCCRKYGGHLVSLTLLQDLQFVQSLCGESINSCWIGGRKLNSTVGYQWMWSDNSPWNNSMFSVDDVSPHCNGTSLSCHRNSTDNLCTVVTNNSNSLVAERCDNPHASLCILDIDTKYNMHRRREYLIILAVVSALILSTTLAVVVWLLVYKRGKKRRRSRKLSIPGASLPSWKVFTKEELRSTTKNFSEGNRLVGDTKTGGTYSGVLSDGTKVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPQVVHRDICASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQAHRYHELLDLHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01938	546	FunFam	C-type lectin receptor-like tyrosine-protein kinase At1g52310	336	546	-	-
	Pste5g01938	546	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	382	394	IPR008266	GO:0004672\|GO:0006468
	Pste5g01938	546	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	141	541	-	-
	Pste5g01938	546	Gene3D	-	41	197	IPR016186	-
	Pste5g01938	546	SUPERFAMILY	C-type lectin-like	39	182	IPR016187	-
	Pste5g01938	546	Pfam	Lectin C-type domain	65	181	IPR001304	-
	Pste5g01938	546	SMART	CLECT_2	45	182	IPR001304	-
	Pste5g01938	546	SUPERFAMILY	Protein kinase-like (PK-like)	233	538	IPR011009	-
	Pste5g01938	546	CDD	CLECT	58	181	-	-
	Pste5g01938	546	Pfam	Protein tyrosine and serine/threonine kinase	267	537	IPR001245	GO:0004672\|GO:0006468
	Pste5g01938	546	ProSiteProfiles	C-type lectin domain profile.	54	182	IPR001304	-
	Pste5g01938	546	ProSiteProfiles	Protein kinase domain profile.	260	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g01938	546	FunFam	C-type lectin receptor-like tyrosine-protein kinase	237	335	-	-
	Pste5g01938	546	Gene3D	Transferase(Phosphotransferase) domain 1	336	545	-	-
	Pste5g01938	546	Gene3D	Phosphorylase Kinase; domain 1	238	335	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01938	Pste-Chr5	12283817	12289164	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01938	75	543	Receptor kinase-like Gene Family	AT1G52310	71.518	0.0	655

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_C-LEC	Pste5g01938		PK_Tyr_Ser-Thr	1.1e-41	CL0016