Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01906 GTGGAGTGACATAGACAGAGAGATTGGAGAGGTGGGGCAGAGTTGTAACAGTAGAAAGAGAAGGTAGCGAAGTGATTAGGATCCTAGTTCCTTCAGGGGTTGGAAAGTGCCAAATTGCAGTGAAGCCGTCAAGCTCAAGACAGCACAGCACAGCGCAGCGCATGTCCCTTGTGTGTGTATATATAGAGTCTGGTCTCAACAATAACATTATCATTTATAAGAGAAGCAAAAACTCTCTATCTATCTGGGTGATGGCGAAGGAGATGGACGAACAGGAGGTGATAGCAAGTGTGTTGCCACACAAGGACTACCGAGACCCACCCGCCGCCCCATTCTACGACCCCGCAGAACTGAAAAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTGGCCACCCTCCTCTTTCTGTATGTCACCATCCTCACCGTCATCGGCTACAACCACCAGGCTGGGGGCGGCAGCGCCTGCGACGGCGTGGGGATCCTGGGCATAGCCTGGGCCTTCGGGGGCATGATTTTCGTGCTCGTCTACTGCACCGCCGGCATATCAGGGGGTCACATAAACCCGGCGGTGACCTTCGGGTTGTTTCTGGCGAGGAAGGTGTCGCTGGTGAGGGCTATTGCGTACATGGTGGCCCAGTCCCTTGGGGCCATATGCGGCACTGGCCTGGTTAAGGCTTTCCAGAAGAGCTACTACAACAGGTACAAAGGTGGCGCCAACATGGTGGCTGATGGCTACAGCAAAGGCACCGCCTTGGGGGCTGAGATTATCGGCACCTTTCTTCTTGTCTACACCGTATTCTCCGCTACCGATCCCAAGAGAGTGGCCAGAGATTCCCACGTTCCAGTCTTGGCACCACTTCCCATTGGCTTTGCTGTCTTCATGGCTCACTTGGCCACCATCCCTATCACCGGCACTGGCATCAACCCCGCTAGAAGCTTAGGGGCTGCTGTCATATACAACAACCAAAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCTTTGATTGGTGCCGCCATTGCTGCATTCTACCACCAGTCCGTGCTGAGGGCCCAAGCAGCAAAGGCTCTCGGGTCTTTCAGGAGTTCTTCAACCCTTTAATTCAAGCCAACCTATATACCTACAAAGACAAGGGTTGATTTAATTTAATTGTGTCCTTTGCGTATACATGGTGGGTTGGAATTTGTATATCCTCCTCGTCACTGTGTGTTATTATTTATTTATGTTTACTATTTGTGGTAACATCCATCTCAGCAGACATGTCCATGGCATGTTAATTTGTGTATGTATTTTCAAGTGTTACATGATCCTCTATCTTACATGTGCGTCAATGTCCTGTGGCTGTGGTTCTCGCGTTTAATTTCTTGTCCATCTATGTCCTTTTGCCTAACTGCGTTGTCATTTTTTGGGGAATTATATCGCGAGACGTTGAGATGATAGGATCACGTGTAGTGAAGAGTTTACGAGTTGTTCTCTGTCTATTTAAGCCTAGCTATCACATTTAATGGATTTATCTGTTGGTGTGGTCACTCCAACGTGGTCCATGTTTCCGTTCTGAAATTAATCCAAGAGAGTGGCCCTATGTTGATATTAATTTACGGCACTTAATTAGCGTATCCCCTACCTAGCTCATGGTCAGGGTCAGGGATGATGACGTGTTTGGTTGAACGTGGGGGACCAAACTCCATGCGAG 1704 0.4959 MSLVCVYIESGLNNNIIIYKRSKNSLSIWVMAKEMDEQEVIASVLPHKDYRDPPAAPFYDPAELKKWSFYRALIAEFVATLLFLYVTILTVIGYNHQAGGGSACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQSLGAICGTGLVKAFQKSYYNRYKGGANMVADGYSKGTALGAEIIGTFLLVYTVFSATDPKRVARDSHVPVLAPLPIGFAVFMAHLATIPITGTGINPARSLGAAVIYNNQKAWDDQWIFWVGPLIGAAIAAFYHQSVLRAQAAKALGSFRSSSTL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01906 316 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Pste5g01906 316 SUPERFAMILY Aquaporin-like 63 300 IPR023271 -
Pste5g01906 316 Gene3D Glycerol uptake facilitator protein. 56 316 IPR023271 -
Pste5g01906 316 NCBIfam MIP family channel protein 75 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 CDD MIP 71 296 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 71 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 202 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste5g01906 316 FunFam Probable aquaporin PIP1-2 56 314 - -
Pste5g01906 316 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 37 310 IPR034294 -
Pste5g01906 316 Pfam Major intrinsic protein 63 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01906 Pste-Chr5 12034875 12037634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01906 31 312 Major Intrinsic Protein MIP AT5G60660 78.947 1.57e-161 450
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01906 5 12034875 12037634 Pste4g02080 4 15222032 15225184 ECH
Pste5g01906 5 12034875 12037634 Pste5g01906 5 12034875 12037634 ECH
Pste4g02173 4 15792373 15792950 Pste5g01906 5 12034875 12037634 ECH
Pste5g01906 5 12034875 12037634 Pste3g03214 3 24843716 24845340 ECH