Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01894 GGAGAATAAAATCTTTTAAATTAGGGCTTGTGTTTGTACATTTGATGGGCAACGTCTCAAGCAGCGGCGGTAACACCCGTCGGCGTCACGGCGGACACACAAGGCGGAGTAACCCTCCGCCGGTGACGCCGCAGCCTGAGATGGCAGCCAATCCATTTGTGTACAATGGTGCGGCGCCGTACCCAAACCCTGCTCCCATGCATTACGCACAGCACCATTACCCGGGTTACTATCCTCCGGTGCCGCATCCACACGTGGACCCTGGGTGGATTCCTGGGCGTCACCCGTGTGCACCCATGATGCCCAACCCTGCTCCCTTCGTTGAGCATCAGAAAGCCGTTACCATTAGGAACGATGTCAACATCAGGAAAGAGACCCTCAGCCTTGAACCCGATCAACAAAATTCTCATCACTTCCTCCTCTCCTTTTCCTTCGACGCCACCGTTTCTGGCAGCATCACCCTATATTTCTTTGCAAAAGAAGGTGAAGACTGTATCCTCACACCAATGAAGGAAAATCATCTTGCACCGGTGACTGTGCATTTCGAGCAAGGTCTTGGACAGAAGTTTAGACAGGCAGCTGGAACTGGTATTGATTTTTCAGTTTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACATGGATGTGTACCCTCTAGCAGTAAAGGCAGATGCATCCCCTGTTAATCATGATGAGTCAGATACAACACCAACATCTGGAAACACAAACTCTCAGATTACCCAAGCGATATTTGAGAAAGAGAAAGGAGAGTTCCGGGTGAAGGTTGTTAAGCAGATCTTGTGGGTGAATCGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACAGAGACTGATGTGGATGAGAATGACCAAGGAAAAGAATGTGTCATCTGCTTGTCAGAGCCTCGGGATACAATTGTCCATCCCTGCCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAACAGATGCCCAATTTGCAGACAACCAGTCGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGAAGATACATTGTTGTTAACTCCTCAAGCTTCATCATGTACAGCTCAATTGTTATACTTTAACATTTCTCCCTGTCTTCTTTCATGGTTTCACCTCACTCTTCTGTATTTTCAATAATCAGAAAACCAAAAGGAAATGGAATTTATATTTGACTTGCGATTCAACATGAACCACAGGCTGGCATTGTTCATAACTTGTACAAGACAATGCCTCCATATCCAATGAGCTTGTTTGTTGTATGTGCTTCTAAATGGCTTCATTCTATATTAAATAAATTTTTCTCTTGGGGTGAT 1352 0.4578 MGNVSSSGGNTRRRHGGHTRRSNPPPVTPQPEMAANPFVYNGAAPYPNPAPMHYAQHHYPGYYPPVPHPHVDPGWIPGRHPCAPMMPNPAPFVEHQKAVTIRNDVNIRKETLSLEPDQQNSHHFLLSFSFDATVSGSITLYFFAKEGEDCILTPMKENHLAPVTVHFEQGLGQKFRQAAGTGIDFSVFEESELLKVGDMDVYPLAVKADASPVNHDESDTTPTSGNTNSQITQAIFEKEKGEFRVKVVKQILWVNRMRYELQEIYGIGNSTETDVDENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01894 338 ProSiteProfiles Zinc finger RING-type profile. 284 323 IPR001841 -
Pste5g01894 338 SMART ring_2 284 322 IPR001841 -
Pste5g01894 338 PANTHER MAHOGUNIN 45 333 IPR045194 GO:0061630
Pste5g01894 338 SUPERFAMILY RING/U-box 283 328 - -
Pste5g01894 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 333 IPR013083 -
Pste5g01894 338 CDD mRING-HC-C3HC5_MGRN1-like 282 323 IPR045195 -
Pste5g01894 338 MobiDBLite consensus disorder prediction 1 35 - -
Pste5g01894 338 FunFam probable E3 ubiquitin-protein ligase LOG2 268 333 - -
Pste5g01894 338 Pfam Zinc finger, C3HC4 type (RING finger) 282 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01894 Pste-Chr5 11954242 11957985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01894 75 303 C3H Transcription Factor Family AT3G09770 62.185 3.48e-97 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01894 5 11954242 11957985 Pste5g01894 5 11954242 11957985 ECH
Pste5g01894 5 11954242 11957985 Pste4g01968 4 14574959 14579518 PCT