Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01888 CTCAAACAAGTGATGCTTTTCTCTTTGTGGATTTTCCGCTGAACTCCTTCATATATATGGCAACTGAAGCTCATGACTTTGCCAAGATTAATGAGCAAGGCACTTCTAGTAGAGCTGATAACCCAATTCAAAAAGATCAGGATGTAGAGTCATCTGAAATAACTGAGGAACTCCCTAGAAGACACGCACATGTGAGAAGGAAAAACCTTATCTTGGAGATACCCTCAAGAACGCCGGATGAAACAAGAGAGGAATTTTTTGGATCAAACAAACTCTCAACTCCATCTCTTATAATTGACTTTCAAGGTCCCTTGTCTACCAAAAACAACTTAACTACTAAAAGTCTTAATCCCAAGCTCAGTTTTAAATTTCGAAACACAAGTTCAGATGTTCTGGAGTCTTCGATTCCAGCACTTGAAGGTTCACCCTCGGAGCCACTGCAAGAGCCCATGATTTCTAGAACATTACCACCTGATGGGAAGAAAATATCATCCTTACCTGTTACCCCAATTGGTCAGTTAAATGTGGAGTTCGAACATGGAAGGAGCATTGCCTATTCAGAAACACATGTTAAAAAGGGACAGCAATTATCGATGCATCGTTCTCGCTCAGTTCCCGTACTTACCGAAGTTGGCAACACAGATGTAGCTGCCATGTTTCGCATTGTTCCTAGCACCCCACGGTTGGCTGGTAGTATTGCAGCGAGGCCCACCACATCTTTGAAATCTCCACCTCACAATATAAATGGGGATGGAGAAGACATCCCCGAAGAAGAAGCAGTCTGCAGAATCTGTTTGAGTGAAGTGGGAGAAGGTTCAAACACCCTTAAGATGGAGTGCAGCTGCAAAGGTGGGCTTGCGCTGGCACACCAAGAGTGTGCAGTTAAATGGTTCAGCATTAAAGGGAACAGAACATGCGATGTGTCAGGAAGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCTAAAGGGCCAAACACTTCACTTGACAAGAAGCAGAAGGTTTGGCAAAATGTTCCCATTCTTGTGATTACCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCGAGTATGGGATCTTGTGCTGTTGCCATTTCTCTCCCTTTTTCATGTATACTAGGTCTACTTGCTAGCATGACATCCACAATAATGGTGAGGTGTGAACATGTTTGGGTTTATGCAATTGTTCAGTTTGTGATGGTGGTTCTCACTGGACGTCTTTTCTATTCACTGCTTAACAAACAAGCTGTTCTATGTATCCTACTTGCTACATTTACTGGGTTTGGAGCAGTGATGTGTGGAACGTATTTTCTTACGGAGTATTTGAGGTGGAGAAGAAGACAATGGGTTGGTGAGTTGAATGAACAGCATGGTTCCCAAGAGGTGGTACTGCCTCATCATCACTCATATTCATCAACCTCATACTCCATT 1442 0.4286 MATEAHDFAKINEQGTSSRADNPIQKDQDVESSEITEELPRRHAHVRRKNLILEIPSRTPDETREEFFGSNKLSTPSLIIDFQGPLSTKNNLTTKSLNPKLSFKFRNTSSDVLESSIPALEGSPSEPLQEPMISRTLPPDGKKISSLPVTPIGQLNVEFEHGRSIAYSETHVKKGQQLSMHRSRSVPVLTEVGNTDVAAMFRIVPSTPRLAGSIAARPTTSLKSPPHNINGDGEDIPEEEAVCRICLSEVGEGSNTLKMECSCKGGLALAHQECAVKWFSIKGNRTCDVSGSSEPTCHSFTSSKGPNTSLDKKQKVWQNVPILVITNMLAYFCFLEQLLVSSMGSCAVAISLPFSCILGLLASMTSTIMVRCEHVWVYAIVQFVMVVLTGRLFYSLLNKQAVLCILLATFTGFGAVMCGTYFLTEYLRWRRRQWVGELNEQHGSQEVVLPHHHSYSSTSYSI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01888 462 MobiDBLite consensus disorder prediction 1 42 - -
Pste5g01888 462 MobiDBLite consensus disorder prediction 24 42 - -
Pste5g01888 462 SUPERFAMILY RING/U-box 239 291 - -
Pste5g01888 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 293 IPR013083 -
Pste5g01888 462 CDD RING_CH-C4HC3_MARCH 243 289 - -
Pste5g01888 462 SMART ringv_2 242 291 IPR011016 GO:0008270
Pste5g01888 462 Pfam RING-variant domain 243 289 IPR011016 GO:0008270
Pste5g01888 462 ProSiteProfiles Zinc finger RING-CH-type profile. 235 297 IPR011016 GO:0008270
Pste5g01888 462 PANTHER OS02G0165000 PROTEIN 23 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01888 Pste-Chr5 11926285 11930764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01888 156 289 C3H Transcription Factor Family AT2G37950 25.926 3.73e-10 57.8