Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01873 AAACCTTTGAAAATTTGCTGTTTGCTTCTACTTTGCTAGAAAGCAAACCTTTCCCATATAGCTTCACTGCTCCCCTTTTTCCAATATGCAAATGATACCCGGTGATCCCTTTTCACTATCCACTTCCCTCCAAAGGCTTCCCAATGAACAAAGCACACGCACAAACCCTAACCCTAATCCCCCTCCACCCATCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCGGAGGTTATTGCTCTTTCGCCAAAGACTCTCATGGCCACAAACCGTTTCATCTGTGAAATATGCAACAAAGGATTTCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACATGTGTTCACCATGATGCTGGCAGAGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAATATAAGTGTGACTGTGGCACCCTCTTCTCCAGGCAACGAACTAATTCATATATACATGTTTTAAGTGAATATATTCTCATGATGTTGATTTTTCATGACAGTTTTATTACTCACAGGGCCTTCTGCGACGCCTTAGCTGAAGAGAGTTCGAGACTCACCTCAGTGGCTTCAGCTAGCCTAAATTTTAAGAGCGAAGATGCAACCATGATGAACACACGGGCTGGTTTGTCCTCACATGGTTTAATCACTGGTCAGGGAATGCAAAGTGTTCCCCAATTTGGTCCACATGGGTTTCGTTTAACGGGGATTGGTGCAGAGCAGCAAAGACCAAACTTGTCACTATGGTTGAACCGGGGAAATCATTACCACAATAACAATCCACTTGACGTGGCATCATCAAGTTCTTCTGGTTTGCCTGAGGTTGTGCAAATGGCACAAGTTAATAATAATTCCTTAATAGGCTCTTCATCAATATTCTCCAATTTTGGAATGCCTGCTTCCAATTCAAAGGGAGAAGGTGGAGCTGCAGATTTGGCAACAATTTGTTCTGAGAGTCAAAACAAGAATTCAAACTCGGCTTCCCCAATGTCAGCTACTGCTCTTTTGCAGAAGGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTGATGAGCTCATCTTCCACTCAAAGTACTAGTTTCAACAGCAATAATGCAAACCAAAGCTGTGGCCAACTTAACCAAGCCTTTCATCAGAACATGAACCAACATGAGAATTTTAATGCAACAAGCAGTAGTGCAACTATGGTGGGTAGCTCCCCTAACTTGAGCTCATTGACGCATGCATCGAACAGTTTTGATCAGTTTTTTATGCAAAACAATGTGGAAGCAGCTCAGTTGAAGCTCCGTCCTAGCTCAAACACAGTGGAACGTAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAAATGGAAGTGGACATCCATTTCTACCCCAAGAGCTGGCAAAGTTTGCTTCTTTAGGCTCATCAATGGGTCTGAACCAATTCACTGCAGAGAGAATGTCATTGTCGATGGTTGAAATGAAGAATTTGTGGAGTGAAAAGAAAGCTAAACAAGGAAAAAACTATGAGCCCCCTATCCGACTAGCTGCAATTGATGTCGCATCCCGTTCTGGTGCAACGGCCAAAGAGTTGAATAGGGAGGTCACTGAATAG 1810 0.4392 MQMIPGDPFSLSTSLQRLPNEQSTRTNPNPNPPPPIKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAGRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRQRTNSYIHVLSEYILMMLIFHDSFITHRAFCDALAEESSRLTSVASASLNFKSEDATMMNTRAGLSSHGLITGQGMQSVPQFGPHGFRLTGIGAEQQRPNLSLWLNRGNHYHNNNPLDVASSSSSGLPEVVQMAQVNNNSLIGSSSIFSNFGMPASNSKGEGGAADLATICSESQNKNSNSASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSFNSNNANQSCGQLNQAFHQNMNQHENFNATSSSATMVGSSPNLSSLTHASNSFDQFFMQNNVEAAQLKLRPSSNTVERNLTRDFLGVSGNGSGHPFLPQELAKFASLGSSMGLNQFTAERMSLSMVEMKNLWSEKKAKQGKNYEPPIRLAAIDVASRSGATAKELNREVTE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01873 574 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pste5g01873 574 Gene3D Classic Zinc Finger 100 189 - -
Pste5g01873 574 MobiDBLite consensus disorder prediction 1 49 - -
Pste5g01873 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 512 IPR031140 -
Pste5g01873 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pste5g01873 574 SMART c2h2final6 107 137 IPR013087 -
Pste5g01873 574 SMART c2h2final6 142 162 IPR013087 -
Pste5g01873 574 SMART c2h2final6 66 88 IPR013087 -
Pste5g01873 574 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pste5g01873 574 MobiDBLite consensus disorder prediction 26 41 - -
Pste5g01873 574 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Pste5g01873 574 MobiDBLite consensus disorder prediction 1 25 - -
Pste5g01873 574 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01873 Pste-Chr5 11834550 11840929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01873 1 511 IDZ Gene Family AT5G03150 45.629 2.80e-132 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g01873 zf-C2H2_jaz 8.6e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01873 5 11834550 11840929 Pste5g01873 5 11834550 11840929 ECH
Pste5g01873 5 11834550 11840929 Pste4g01959 4 14515263 14519266 PCT