Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01871 ATGAGCGTCATCGACATTCTCACAAGAGTTGATTCCATTTGTAAAAAATACGACAAATACGACGTCGAAAAACAAAGGGATTCTAATCTCTCCGCTGATGATGCATTCGCCAAACTCTACGCCTCCGTTGACGCCGATATCGAGGCATTACTTCAGGAGAAAAGTAAGGCTTCTACTGTAGCCATCAATGCCGAGATTCGTCGAACCAAGGCTAGGTTGTTGGAGGAGGTTCCAAAGTTGCAGAGATTGGCTATGAAAAAGATTTTGCTGCTCGCAATGATTTGGCTCTTGCATTACCGGATAGGATTCAGGCTATCCCAGATGGGACCCCTGCATGACCCAAACAAACTGGAAGTTGGGCAGCTTCAGCCTCACATGGAAAATTTGATGATGAATACTTCCAACAAACAGAAGAATCAAATCGATTCAGGCAGGAGTATGAAATGCGATCAAGGTTTGGATATGATTGCAGAAGGATTGGGTACTTTGAAAAACATGGCACATGATATGAATGAGAGCAATCTATTATTTATGCACCGAATGCAGGAATTGGATAGACAAGTTCCACTGATGGATGAGATTGATACTAAGGTGGACAAGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGAGAATTGCAGCCTATCTGTACAATCTCTTTTCACCTGAATACTGGAAATTTGATAGTGTGGAAAATTTGAGGTTCATATTTCAACCTTTTTCCCCCACATGTGGACTTCAAAACCTTAAACTGCATGTTATGTTA 843 0.4057 MSVIDILTRVDSICKKYDKYDVEKQRDSNLSADDAFAKLYASVDADIEALLQEKSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKILLLAMIWLLHYRIGFRLSQMGPLHDPNKLEVGQLQPHMENLMMNTSNKQKNQIDSGRSMKCDQGLDMIAEGLGTLKNMAHDMNESNLLFMHRMQELDRQVPLMDEIDTKVDKASSDLKNTNVRLRDTVNQLRSSRNFCIDIVLLIIILRIAAYLYNLFSPEYWKFDSVENLRFIFQPFSPTCGLQNLKLHVML 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01871 281 Gene3D - 141 216 - -
Pste5g01871 281 SUPERFAMILY SNARE fusion complex 135 213 - -
Pste5g01871 281 Pfam SNARE domain 190 236 IPR000727 -
Pste5g01871 281 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Pste5g01871 281 CDD SNARE_Qc 150 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01871 Pste-Chr5 11798860 11801129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01871 1 246 SNARE and Associated Proteins AT3G09740 54.182 1.50e-85 255