Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01862 ATGGAAATTCAATTCCAACAGCCAAACCTGCAGCATCAGAAAGCAGGCATTGCAATAACCAAAGGAGGCAAGTTCAAAGGGAAAAGCAGAAACAACAGCAACAAATTTGTTGGGGTGAGGCAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCCGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGGTCCAACACTCGCACCAATTTCATCACTCATGTGTCCTTAGATTCTCCTCTTGCTTATCGAATTCGAAATCTGCTTAACAACAGAAAAGGTTCAAAAAAACAGGAAGATGCTAATGCTAGTAATGCACCTGCCCCAAGAGTTAGCACCACTTGCAGTGCCAGTACTAGTACTAGTACTAGTACTGTTACCAGTGTTAGTAGTAATTCAGGAAAGGGCAATGACAACAATGACAAGTCTCTTTCAACTGTCACAACTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCCATTGTAGGGAGGACTTTGTGTCAGGTCATCAATCCAATACTTCATGGGGTTTTGGAACTGTCTTTGATCGTTTCCCTATTGCTCAAATATTGGATATACCAAAGATTGATGATGGCCTCACTGGTCCAGCTGGCTTCGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTATATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACTCTAATGAAACACTCTGGGATCTTCCACCCTTGTGCTCATTGTTCTGTTAA 840 0.4226 MEIQFQQPNLQHQKAGIAITKGGKFKGKSRNNSNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLAYRIRNLLNNRKGSKKQEDANASNAPAPRVSTTCSASTSTSTSTVTSVSSNSGKGNDNNDKSLSTVTTQSSNLFDDAYKPDLSHCREDFVSGHQSNTSWGFGTVFDRFPIAQILDIPKIDDGLTGPAGFELSEFERMKVERQISASLYAINGVQEYMETVQDSNETLWDLPPLCSLFC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01862 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 245 - -
Pste5g01862 279 MobiDBLite consensus disorder prediction 120 166 - -
Pste5g01862 279 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Pste5g01862 279 FunFam ethylene-responsive transcription factor RAP2-11 34 93 - -
Pste5g01862 279 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Pste5g01862 279 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Pste5g01862 279 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Pste5g01862 279 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Pste5g01862 279 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Pste5g01862 279 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pste5g01862 279 MobiDBLite consensus disorder prediction 113 166 - -
Pste5g01862 279 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01862 Pste-Chr5 11761361 11762200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01862 10 279 AP2-EREBP Transcription Factor Family AT5G19790 42.294 8.47e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste5g01862 AP2 6.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01862 5 11761361 11762200 Pste5g01862 5 11761361 11762200 ECH
Pste5g01862 5 11761361 11762200 Pste9g00863 9 4585585 4586553 PCT