Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01842 AAATGACGTTACTAAATGGGGTGCGGAAAGAAAATTGGGAGGTGAAAAAGCAATGGGTAGAAGTAATGGGAGGTGAAAAAGCAATGGGCAGAAGTTGCCGGTCGCAGCGAAGAAAGAAGACTGGTACCAATTACATAAACCCCTAATTCCTTTGTTTTCTTCAAACCCCAATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGACAGAAAGAAGTTCGGCGGCGATATTGCCAGGTTCCAGAAAAAAGACAGTGATACTGATTCGACGAAGATTTGGAGCGCCGCTCAAGATGAAATCGATAACACAAGAGAACCAGTGGAAGAGAAAACAGCGTCAACGAAGAAGAGAAAGCGCAAGGGAACCTCTTCCGAATCTGTTGAAGGATTCAGCGTTTTTAGAAATTCTACGTCTGCGGTGCAGTCGAACGATGAAGTCCGAGTTCAAGAAGAGTTCGTTGAGCTGAATCAGAAGAAGAAGAAGAAGGAACACAATAAACAGCTCGAGCGGGACGCAATATTCAGAAAGAAGCACAACATTCATGTCTCTGGTTATAACGTGCCGTCTCCATTACAAAGCTTTGATGAGTTGAAATCGAGATATAACTGTCCTTCATATTTGTTGCGCAATCTGAAGGAACTTGGATTCAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAGATCCAGAAAGAGGTGGCATTCGAGCTGTAATCCTTTGTCATACTCGTGAATTATCTGTTCAAACATACCGAGAATGCAAAAAGCTTGCTAAAAGAAAAAAATTCCGTATCAAGTTGATGACCAAAAATCTTGTTAGAAATGCTGATTTTTCAAAATTTCCATGTGATATACTAATATCTACGCCGCTTCGGTTACGCCTGGCTATAAAGAGGAAGAAGGTTGATCTCAGTAGAGTTGAGTATCTTGTCCTGGATGAATCGGATAAGCTATTTGAGCCTGAATTATTTAAGCAGATTGATTCTGTTATCAAGGCATGCTCAAATCCCTCAATAATACGTTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGACAGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGAAAGAACATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGCTTTGCAGAGAGCCTAAATCCTCCAGTGTTGGTCTTTCTCCAAAGCAAGGAGCGAGCTAAGGAGCTGTACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTCTGATTGCTACTGATGTTGTTGCCCGGGGCATGGATTTCAAAGGCGTGAACTGTGTGATTAATTATGATTTCCCTGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAAGACGACATTCCATTCCTTCGGAATGTTGCTAATCTTATGGCAGCTTCCGGCTGTGAGGTTCCATCCTGGCTCATGGAATTGCGCAAAAAGAAGTGGAAAAAACACAGGCCCAAAAGAGAATCCATCTCAACAAAACCAGACAGATAACCCTGTAACAGTAGAGAATGGGAACATGTTTTTAACCTTGAAATTTCGGCGAAGTGTTTATTTCTTGATAGGCCCTGCAGCCTAGTATCAATATTGCTCATCCCCAAAAAGGGGAGGAGTGGCGAGGCATTTGTGACCAAGAGAGAATCGCGTTTTAGGTTAATGCGCTAGGCGGGTGGCAGTTTCCCTTTAAACGATGATCGTCTTCATATTTCATATAAAAAATATCATAATACCCTCAGGCTCGTTGTAACCCATTCGCAGTGTAATCTCATGAAATGGGAATTTTTGTGCCCCGAGTAGTGAACTTGTTTTTTTCCCTTCGAAACCAGAAATGTTTATTTGATAAGCTTTTTAAGAATTTTCTTTTCATTAAAGGTTTTTTTTTTTATTGCGG 2094 0.415 MANDSSFLFAGIRFDRKKFGGDIARFQKKDSDTDSTKIWSAAQDEIDNTREPVEEKTASTKKRKRKGTSSESVEGFSVFRNSTSAVQSNDEVRVQEEFVELNQKKKKKEHNKQLERDAIFRKKHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFREPTPIQRQAIPVLLQDPERGGIRAVILCHTRELSVQTYRECKKLAKRKKFRIKLMTKNLVRNADFSKFPCDILISTPLRLRLAIKRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYSELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRSGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELRKKKWKKHRPKRESISTKPDR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01842 508 Gene3D - 180 327 IPR027417 -
Pste5g01842 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Pste5g01842 508 MobiDBLite consensus disorder prediction 28 73 - -
Pste5g01842 508 Gene3D - 328 505 IPR027417 -
Pste5g01842 508 Pfam DEAD/DEAH box helicase 174 303 IPR011545 GO:0003676|GO:0005524
Pste5g01842 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 467 IPR027417 -
Pste5g01842 508 SMART ultradead3 161 331 IPR014001 -
Pste5g01842 508 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 176 496 - -
Pste5g01842 508 Pfam Helicase conserved C-terminal domain 346 449 IPR001650 -
Pste5g01842 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 316 IPR014001 -
Pste5g01842 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 488 IPR001650 -
Pste5g01842 508 CDD DEADc_DDX52 153 319 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pste5g01842 508 Gene3D - 99 179 IPR027417 -
Pste5g01842 508 MobiDBLite consensus disorder prediction 47 70 - -
Pste5g01842 508 SMART helicmild6 368 449 IPR001650 -
Pste5g01842 508 CDD SF2_C_DEAD 328 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01842 Pste-Chr5 11641713 11648739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01842 136 487 Eukaryotic Initiation Factors Gene Family AT3G19760 29.737 1.03e-46 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01842 5 11641713 11648739 Pste5g01842 5 11641713 11648739 ECH