LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01832	TGAGATGCCGAAGGCAAAGTACTTTAAGAAGGGAAGAGCTTGGCCTAGAATGAGCGGGGATAGAGATTTTGGTATGAATGCTTTCATCAACGGAAGTTTCATCCTCAGTTCCTACCCACCCACCTCGGACTTATTCATCATCGTTCGAAAGACACGAGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAGTCATACAAAAAGTCTCATCTTGGCAATGAATGGAAGAAGCCTTTTGCAGGTTCATCCCATGCAAAGGGGATTGTTCTTGAAAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCAAGGGTTCAACTCATAAAAAATGGGAAGAAGATTGCTGCATTTGTGCCAAATGATGGTTGTTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAAGGTCATGCCGTGGGTGATATTCCTGGTGTCAGATTCAAGGTGGTGAAGGTATCTGGTGTGTCTCTCCTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAAACTTCGGGACGTGTCCTCTCAATAGTTTTTCCAAAAAAATATTATGAATGTTGCTTCATGAGACTGGATTAGTTCTATTGACAGTTTTGTATCTCTAATAGCAATTTTTAATTTGGCTCATATCTCACTTATCCTCTTTTTAGGGATTTACATTATAATAAGTTCACTAACTATGCGCCA	751	0.4168	MPKAKYFKKGRAWPRMSGDRDFGMNAFINGSFILSSYPPTSDLFIIVRKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01832	188	CDD	Ribosomal_S23	72	185	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Pste5g01832	188	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	48	188	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pste5g01832	188	SUPERFAMILY	Nucleic acid-binding proteins	66	186	IPR012340	-
	Pste5g01832	188	Gene3D	-	71	188	IPR012340	-
	Pste5g01832	188	NCBIfam	30S ribosomal protein S12	52	187	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Pste5g01832	188	FunFam	40S ribosomal protein S23	71	188	-	-
	Pste5g01832	188	ProSitePatterns	Ribosomal protein S12 signature.	105	112	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Pste5g01832	188	Pfam	Ribosomal protein S12/S23	77	187	IPR006032	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01832	Pste-Chr5	11582342	11585738	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01832	49	188	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	95.714	9.39e-94	267

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g01832	5	11582342	11585738	Pste5g01832	5	11582342	11585738	ECH
	Pste5g01832	5	11582342	11585738	Pste4g02298	4	16508035	16509650	ECH
	Pste5g01832	5	11582342	11585738	Pste4g02298	4	16508035	16509650	PCT