Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01828 CGACGAAGCCAAAAGAAGCGTGAAACCCATTCCGTGGTGTTTCCATTTTCCATTTTCTTGAGTTGTCTTAAATTGTTATATTGGTAGATATAGTTCCCGCCAAGAAAGGAAGGTTTGTGGTGGAAGATAAAAAGGGCGGTGGTCGGAAACGGAAACGGAAACGGGATGTACCTTTTGGCAGAAGAAGAGACGGATGAGGGAATCGGATTCGGTTTGGGAGCGGTGTCCAGGGATCCATTGGGGTTGATGGATGTACTGAGCACTTATTTTCCTCCACAACTCTTCTCCCTCGAAGAAACCTGCCTCAATCTCACTTCTGCTCTTCTTTCCTTCTTCTCTTCACCGCCGGGACAAAACCTCGCTCTTCAGGTCAAAACTGATTGTGGAAACTATGTCTTGTCACTTGACTTTAAGCAGTTCAGAAACATCTGTTATGTTGAAGAATTTTATAAAATGTTAGAGGACAAACCTAAATTGGCTCTCTTATGCATGAGTGCTGCACTTCACAAGGTTTTGCTTTCCAAATGGAACAATTACAATCTCGAGCCCAGTGCAAAGGTCGATATTCGTCTTCATAACTGTCCTGAGACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAACTTGTCTCAGTTCGGGGTACTGCTGTCAAGGTCAGCACTGTCAGGCCTCTGGTGGTGGAAATGAATTTTGAATGCAGTAAATGCAAACAACTAATTACACGAATATTTCCTGATGGAAAATATTCCCCACCATCTACTTGCAATTTGAATGGTTGCAAGAGCAAAATCTTTAGTCTGTTGCGGCATACTGCTAAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCCGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTAGAATGTGAGCTTACCCAAGATCTCGTTGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATCATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTACCTTGAAGCTGTATCCATTAAAAATTCAAAGTCACAGTCTGTCCCTGAGGATCTGCAAGACACTAGTCCCAAAGCTAGGCCTACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTATAAAGTTTGCAAAGGAGCATGCTGGGATAACTCTAGCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGTCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGCGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTGGTGAAGGATCCTATGACCAATGATTATGCTTTTGAGGCAGGTGCCATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGACAAAATGTCATCAGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGAACTTCTGTCTTAGCGGCTGCAAACCCTGCTGGTGGTCATTATAAGTAA 1653 0.4241 MYLLAEEETDEGIGFGLGAVSRDPLGLMDVLSTYFPPQLFSLEETCLNLTSALLSFFSSPPGQNLALQVKTDCGNYVLSLDFKQFRNICYVEEFYKMLEDKPKLALLCMSAALHKVLLSKWNNYNLEPSAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMNFECSKCKQLITRIFPDGKYSPPSTCNLNGCKSKIFSLLRHTAKTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNKNQGFYYLYLEAVSIKNSKSQSVPEDLQDTSPKARPTELFDLFSFSSKDLEFVIKFAKEHAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01828 495 Gene3D - 333 495 IPR027417 -
Pste5g01828 495 Gene3D - 173 223 - -
Pste5g01828 495 FunFam DNA helicase MCM8 isoform X1 173 224 - -
Pste5g01828 495 Pfam MCM OB domain 146 274 IPR033762 -
Pste5g01828 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 489 IPR027417 -
Pste5g01828 495 Pfam MCM P-loop domain 349 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 ProSiteProfiles MCM family domain profile. 350 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 SUPERFAMILY Nucleic acid-binding proteins 74 276 IPR012340 -
Pste5g01828 495 SMART mcm 142 495 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 Gene3D - 146 275 IPR012340 -
Pste5g01828 495 FunFam Retrovirus-related Pol polyprotein LINE-1 348 461 - -
Pste5g01828 495 PRINTS Mini-chromosome maintenance (MCM) protein family signature 459 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 PRINTS Mini-chromosome maintenance (MCM) protein family signature 372 387 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 PRINTS Mini-chromosome maintenance (MCM) protein family signature 432 446 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste5g01828 495 Coils Coil 444 464 - -
Pste5g01828 495 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 77 494 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01828 Pste-Chr5 11562702 11566752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01828 23 494 Core DNA Replication Machinery Family AT3G09660 65.191 0.0 667