Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01823 AAAAGGGAAAAGGGAAAAGGGAAAAGGGAAAAGGGAGAGGAAGAAGCGAAAAGGAGTGAGAGGTGAGGGTAGTGTTTGCATAATAAAAGAAAACGAACGGTGGTGATAGGCTTCAGGCTAGATCTCACTCGTCTCCACCTTGCTTTCTTCTCCAGCGTCCGATTCCCTCACCGATCTCGCGCCAAAAACAAATTCGTTACAACCAGCCCAGGGTTCCGGCGACCATGGCCGACGGTCCGGCAAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTTCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCCAACGGTAAAATCGCTAAGGATGCCAAAGAGACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCATCACTAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAACGGAAGACCATTAACGGTGATGATTTGCTCTGGGCAATGGCCACCCTTGGTTTTGAGGATTACATCGATCCTCTTAAAATTTACCTCACAAGATACCGAGAGTCTCTTTCTGCTCATATCTATGTCACTGTTTTTCAATATGTCGTATTTCAGGGTGATACCAAGGGCTCGGCTAAGGGTGGAGAAGCATCATCTAAGAAAGATGTTCAACCAACTCCTAATGCTCAGCTTTCTCATCAAGGTTCTTTCTCGCAAGGTGTTAGTTACACTAATTCTCAGGTATCTCTGCTCTTTGTTTGATGCTATGTCTCCTTTATTTGTGTACTTACGGGCTGTAATGGTTGAATGTTAAATGAAGTTACTAAAGTGGTTGTTTGAAATCTGAATCATCACTTCTGTGTTTATATTTGGACTTTCTTTATGTGACATAAATAGGATGTTTGACTCACTGATACTTCCACTTGCAGAGGTAAGTTTAATTCCTTTTCCTCAGAAAATCTTTAAGCTTACGTTAGTGAAAATGCTCCAGGCAATACTGGCTCTAATACCATTATGATTTGATGTTAGAAAACATATGTTCACTGTGTATTTAAAAGGTCCATCTTAGAATTAGTGCCTGATGATACTAGTCAATGTGTTTGTTACTTTTGGATGGTAGTTCAATCAATTCACCCATTAAAGTCCCTTGATAAAAGTTGTGTGAGTTGTATTTTCTTTATTGGTTTTTTTTATGTGTGCCCAACACATTTTAGCAATTATTAAAACCTGATTTTCAATGCACATCTTAATATATTTATTATGTGAGAGAATCAGAATCACCATTGTCACTATCACCATTACCACTGCCACTGTTATCATCACCATCATGTGTCACCATCATGACCACCACCACCTGGTGGTGGTGGCAGTGGTGATAGTGAAGGTGGTGAAAATAAAAGAAGATACGAGGAGTTGTTATTTTTGATAAATTTTAACATGTTTGGAGAAGTGTGTAAAAGAGTGTGTTGCTAACATTTTTCAATAAGATATAAGTGGAAAAACCAAGGTTTTTATAGAGTCATTCTCTCTCATAATAAATACATTCAAATTTGCATTGAAATTGATGTTTTAATAATTGTTAAAATGTATGATTAGGCACACTTTAGAAAAACGGATTCTTTATTTAGAGGTTCAATGATTTTATCTCTATACTTTTTGGACTAAAAAATATAAGCATTTTCTAAATAATTTAACCCTATTTAATGTTATATTTATATTTCCAAAATTTTCCTCAAATTAATCTAGTTTTATTTTCCAAGAGAATACATATTCCCAAGAAAAAAGTTACCCAGAGAATGGGAGCTGAACAGACATGGGTGAGTAATGTAAAGGGTCTCTCTTTTCCTCTCGCCTGCTTTTTTTCTTTATTTCCAGAAAATGGAAGCTGCCCATCATTCAATTTTTAAATAAAAACCGAGCAGATTAACGTGCTACTCCCTGTAAATGCAATTTTCAAATTCAATTGAGAACTCATTTACACTGTTTTTTAAGTGAAAATTCAAATAAAAATTAATGTTAAAAATAGATTAGTGTGCTAGTCCCTGTAAATGCATTCATGGAATAAGAGCTAGCAAG 2081 0.3811 MADGPASPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRESLSAHIYVTVFQYVVFQGDTKGSAKGGEASSKKDVQPTPNAQLSHQGSFSQGVSYTNSQVSLLFV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01823 180 MobiDBLite consensus disorder prediction 139 166 - -
Pste5g01823 180 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Pste5g01823 180 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pste5g01823 180 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pste5g01823 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste5g01823 180 Gene3D Histone, subunit A 16 166 IPR009072 GO:0046982
Pste5g01823 180 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste5g01823 180 FunFam Nuclear transcription factor Y subunit B-3 19 151 - -
Pste5g01823 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pste5g01823 180 MobiDBLite consensus disorder prediction 1 28 - -
Pste5g01823 180 MobiDBLite consensus disorder prediction 148 166 - -
Pste5g01823 180 SUPERFAMILY Histone-fold 27 117 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01823 Pste-Chr5 11544612 11547234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01823 17 180 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.429 8.59e-80 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste5g01823 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01823 5 11544612 11547234 Pste5g01823 5 11544612 11547234 ECH