LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01792	CACTGAGACAGTTAGTTGTCCGTACAATTTTGGAGGTTGGATCCCACTGCGAACCACCAATCCCAAGATTCATACTTCCCAATAACCATTAACCATAAACCATAAACCATGCCATGCAACTCTATACACTTTTTTTTATACTACTTTTAATAATTCCCAGTAATGTTGAGAAGTAGAAGAACAAGTGTGGTTAATTTTTGGAAAGGGAACACTAATTCAAAGCACCCCTTCCTCTCTGTCTGCTTCTGCTTTCTAATATATTTATAGTTAATACATACATATATCTAAGGTCAATAGCGACTGTTGAGATTTGAGAAGGTCCCCAGAAGAAGCTCAAGCCTTTTTCAATTTTTGTTGTTTTCTTTGGTCGGATCTGGAGAACACAATCTTACTTGTGAAACCCAGGAGAGATACATCATCCTTCTGGGAAGTGTGAAGCTGTTACCATGTTGCTTTATTTCTCAGCTTTAATTTCTGAATCACATGTAAAGTGAGTACACTGCAAAATATAGACATTGAAGATGGATATTAAGGAAGCAGAAAGGGTGGTCATTGCCAAACCTGTTGCTTCAAGGCCTACTTGTTCCACTTTCAGATCTTTCTCAGAGCTCCTTGCAGGTGCAATCAATGCTTCTCCCGATTCTCAAACTACAGTTTCTGCCATTAGACCTAAGATAGTGAGGTTCAAGCCAGCAGTGAATCAAACCCCTGCAGGGTTTGTTTCTTCTCAGACTGATACTTTTGGAGCTACACTTGATAACTCTTCTGCCAAAAGTCCTACACTTGACACCAAGCAGTCTCTCATATACAAACCAACTGCAAAGCTCGTATCAAAGACCACTGTGTCTCTTTTGGCAAATATGAAGGGAAATTGTAGTACTAGTCAGCAACAAACACGGCAAACAATGGAGGCCAATTTTCAACATTCAATGCATGAGAACTTTAGAACCAACACGAGCTCACAACTTGAGAGTATTATCCCGCAAGCAGAAACAAACCAGAGCAGTGAACCTAGTAAGATGGTGCAACAGAACATAGAGGAGGACCAAAAAGCTTTAACATCTTCAGTCAACTGTGATCGACCATCTTATGATGGGTACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGTGAGTACCCTCGAAGTTATTACAAGTGCACATATCCCAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCACTTGATGGACAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCTAAGCCACAACTTCCTAAGAGAAACTCAGCAGCAGGGACACAAGGATCAGTGGGTGTGTCTGATGGAATGGTTCAAGATATGTGGAGTCATAGCCACAGTGAGAGGAATGAAGGCAATGAAAGTAGAATTGATAACACAGGACTGTCTATGTTTTCAGAATATCATGTCAAAGTTCCACAGCCTAATGATTCTGCTCTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAATTCGTGTGGTCTAAGTGGGGAATGTGAGGAAGGAGGCAAGGGATTTGAGGCACTTGAAGACGAGCCCGGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGATGCAACGTTATCAGAGGAAGGTTTGGTAGAGCCTCGAATTGTGATGCAAAGTTTTACCGATTCTGAAATACTTGGAGATGGCTTTCGTTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGTTACTATAGATGTACTAATATCAAGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCAAGATCATTTGTGACTACATATGAGGGAAAGCACAACCATGAGATGCCACTCAAGAACACAGGAAATATGGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGATTAACACTTCAATTGATTAGTTAAAAAGTATGAATATGACTCAATCACATTGGCATGAAAAATAATTGAGAGGATCCATTCCTTTTATATCCTAAAGTATGCTCAGAATAATTGAAGTTGATCAGAAAGATGAAGACATGACAATTTTTAATGCAGAACCTACTTGTTTGTAATAATAACCGTATTGGCGCTGATAGTTTGTATTGGTAATATATGGAATCGGGGGCATTGGCACGGTTGCACTGTCCTTCAATAACTTTCCATCTTTGCTAGCTGCCTTTGTATACCAAATCGGTATATTCTGTCCTCTATCATCATATATTTTAATTTCTCTGTCTTTTAATCTCGAGTATATATTATATGCTAATAATTGTTATTGTAATTTGCAAATCATTGGCATCGCTAGAAACAACCTGAAAAGACCTTTATACACTATAAGCTATGGACATAGTTTTGTTTCTT	2387	0.3904	MDIKEAERVVIAKPVASRPTCSTFRSFSELLAGAINASPDSQTTVSAIRPKIVRFKPAVNQTPAGFVSSQTDTFGATLDNSSAKSPTLDTKQSLIYKPTAKLVSKTTVSLLANMKGNCSTSQQQTRQTMEANFQHSMHENFRTNTSSQLESIIPQAETNQSSEPSKMVQQNIEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSLDGQIAEIVYKGEHNHSKPQLPKRNSAAGTQGSVGVSDGMVQDMWSHSHSERNEGNESRIDNTGLSMFSEYHVKVPQPNDSALNIGATNAGGGSTENSCGLSGECEEGGKGFEALEDEPGSKRRKNENQSNDATLSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGNMASERDSQASLSKDKP	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01792	467	SMART	WRKY_cls	189	247	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	SMART	WRKY_cls	385	444	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	MobiDBLite	consensus disorder prediction	437	467	-	-
	Pste5g01792	467	MobiDBLite	consensus disorder prediction	339	360	-	-
	Pste5g01792	467	FunFam	WRKY transcription factor	175	249	-	-
	Pste5g01792	467	ProSiteProfiles	WRKY domain profile.	191	248	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	FunFam	WRKY transcription factor 57	371	445	-	-
	Pste5g01792	467	SUPERFAMILY	WRKY DNA-binding domain	378	445	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	ProSiteProfiles	WRKY domain profile.	380	445	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	Pfam	WRKY DNA -binding domain	387	443	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	Pfam	WRKY DNA -binding domain	191	245	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	MobiDBLite	consensus disorder prediction	242	262	-	-
	Pste5g01792	467	SUPERFAMILY	WRKY DNA-binding domain	188	248	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	127	456	IPR044810	GO:0003700
	Pste5g01792	467	Gene3D	WRKY domain	174	249	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	Gene3D	WRKY domain	371	446	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste5g01792	467	MobiDBLite	consensus disorder prediction	339	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01792	Pste-Chr5	11344644	11352119	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01792	89	446	WRKY Transcription Factor Family	AT2G37260	44.149	3.58e-89	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste5g01792		WRKY	7.2e-25	CL0274