Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste5g01783 | ATGGACAGGCTGATAAAAGTAGAGGCAACAAACACGGTCCCGATAAGGATAGAAGCAGGTAAAAAATGCGAGGGGCAAATCACGTTACGCAACGTTATGTACACCATGCCAGTGGCGTTCAGGCTTCAACCGTTGATAAAAACGCGTTACACGGTGAAGCCTCAATCGGGAATCATATCCCCGTTAGCCACAGTAACTATAGAAATAGTCTATCACCTTCCACAAGGGTCGAGTCTCCCTCAGTCCTTTCCCCATTCGGAAGACTCCTTCCTCCTCCACAGCGTTGTGGTTCCGGGCGCAAACGTGAAAGAAGCCTCTTCCATGTTCGAATCTGTCCCCAGCGACTGGTTCACAGCGAAAAAGAAACAGGTTTTCATAGACAGCGGCATCAAAATCATGTTCGTGGGTTCGCTTGTATTGGCGCAGTTGGTTCAAGACGGTTGCATAGACGAGATAAGGGAAGTGCTGGAACAGAGTGATCCGAAGTGGAAGGCCGTTGACTCCGTTGACCAAAACGGTGACACGCTCCTGCACGTGGCGATTTCTGGAAGCAGAGCGGACCTGGTTCAACTGCTCCTCGAATTCAACGCGGACATAGAAGCGAAAGATCGTTCCGGCGAGAGTCCCTTACAAGCAGCGTGTTCGGGCGGAGAGGAACTAATCGTTGAGCTTCTGCTAGCTCATAAAGCTAGAACGGAGAGAACGGAGACGTCGTCGTTGGGAGCGATTCACTTGGCGGCGAGAGAAGGACACGAGGAGGTTCTACGGCTGCTGCTGCTGAAAGGAGCGAAGGTTGACTCGTTGACGAGGGAGGGAGAGACGGCGCTGCACCTTGCAGTTAAAGAAGGGGAGAGAGAGTGCGTGAGGCTGTTGCTGGCGAACAATGCGAGAACAGATGTTAGGGAATCGAGAGAGGGTGACACGTGTCTGCACGTGGCGGCGGGGGTGGGAGATGAGGGCATGGTGAGGGTGTTGTTAAACAAGGGAGCGAACAAGGACGTGAGGAATTATAGGGGAAAGACAGCGTACGAGGTGGCGGAGGAGAAGGGACAGGCGGGGGTGTTCGACGCGCTGCGGTTGGGGGATGAATTGTGCGTGGCGGCGAGGAAGGGGGAGGTGAGGAGTATCGAGAGGGTGATAGAGAGTGGGGCGGTGGTGAACGGGAGGGACCAGCATGGGTGGACGGCGTTGCACAGGGCGTGCTTCAAGGGGCGAGTGGAGGCTGTGAGGGCGTTGTTGGAGAGAGGGATTGACGTGGACGCGCGGGACGAGGACGGGTACGGGGCGCTGCACTGCGCGGTGGAGGCGGGGCATGGTGACGTGGCGGAGGTGCTCGTGAAGAAGGGGGCGGATGTGGAGGCCAGGACTAATAAGGGTGTCACGGCGTTGCAGATAGCTGAGGCGTTGGGTTATGTGGGTATAGGGAGGGTGCTTGTTGGCGCTGGAGCACAAAAAGAAGAAGCTGTTCTCCAGATGAAAAGGAAGAAGCGGTTGGGAACAAGGAGGGAGAGACACATTCCACCCACCTTTGATCTTTCAATGCCTCTTGCTGTGCTTTAG | 1560 | 0.5551 | MDRLIKVEATNTVPIRIEAGKKCEGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEIVYHLPQGSSLPQSFPHSEDSFLLHSVVVPGANVKEASSMFESVPSDWFTAKKKQVFIDSGIKIMFVGSLVLAQLVQDGCIDEIREVLEQSDPKWKAVDSVDQNGDTLLHVAISGSRADLVQLLLEFNADIEAKDRSGESPLQAACSGGEELIVELLLAHKARTERTETSSLGAIHLAAREGHEEVLRLLLLKGAKVDSLTREGETALHLAVKEGERECVRLLLANNARTDVRESREGDTCLHVAAGVGDEGMVRVLLNKGANKDVRNYRGKTAYEVAEEKGQAGVFDALRLGDELCVAARKGEVRSIERVIESGAVVNGRDQHGWTALHRACFKGRVEAVRALLERGIDVDARDEDGYGALHCAVEAGHGDVAEVLVKKGADVEARTNKGVTALQIAEALGYVGIGRVLVGAGAQKEEAVLQMKRKKRLGTRRERHIPPTFDLSMPLAVL | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste5g01783 | 519 | Pfam | Ankyrin repeats (3 copies) | 243 | 336 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 392 | 424 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 135 | IPR000535 | - | |
| Pste5g01783 | 519 | Pfam | Ankyrin repeats (many copies) | 169 | 211 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 305 | 336 | - | - | |
| Pste5g01783 | 519 | Pfam | MSP (Major sperm protein) domain | 18 | 108 | IPR000535 | - | |
| Pste5g01783 | 519 | SUPERFAMILY | Ankyrin repeat | 166 | 487 | IPR036770 | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 238 | 266 | - | - | |
| Pste5g01783 | 519 | PRINTS | Ankyrin repeat signature | 272 | 287 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | PRINTS | Ankyrin repeat signature | 441 | 455 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 271 | 303 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | Pfam | Ankyrin repeats (many copies) | 403 | 446 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | Gene3D | - | 247 | 358 | IPR036770 | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 271 | 302 | - | - | |
| Pste5g01783 | 519 | Gene3D | Immunoglobulins | 1 | 134 | IPR013783 | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 305 | 337 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | PANTHER | ROLLING PEBBLES, ISOFORM B | 222 | 358 | - | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 238 | 270 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 205 | 237 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 172 | 204 | - | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 172 | 204 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 425 | 457 | - | - | |
| Pste5g01783 | 519 | Gene3D | - | 359 | 491 | IPR036770 | - | |
| Pste5g01783 | 519 | SMART | ANK_2a | 425 | 454 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 205 | 234 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 458 | 487 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 392 | 421 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 305 | 334 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | SMART | ANK_2a | 238 | 267 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | Gene3D | - | 137 | 246 | IPR036770 | - | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat profile. | 425 | 457 | IPR002110 | GO:0005515 | |
| Pste5g01783 | 519 | ProSiteProfiles | Ankyrin repeat region circular profile. | 392 | 424 | - | - | |
| Pste5g01783 | 519 | SUPERFAMILY | PapD-like | 2 | 146 | IPR008962 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste5g01783 | Pste-Chr5 | 11304889 | 11306448 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste5g01783 | 264 | 466 | Miscellaneous Gene Families | AT1G05640 | 27.358 | 2.89e-09 | 57.8 |