Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01772 TGGGGTTTATATTATTACTTACAGCAAAGGAAGCGAGTGTTTCAAGCTGCGGCGTGCGCTTTCTCTGAACTCAGTGCACCACACAGCACAAACAAGCTCTCAGTCTCAATCTCAGGAAGGGTCAATATGCAAGTTTTTCCCACTGAAGGTGAAAATGCTTTGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATACAATGCCCCTCAAGCTCCTGGGCCAAATGGAAAACAGCGGACCTCAAGTTTGGAGTCACCAATCATGTTACTGTCAGGTCACCAGAGTGCTATATATACCATGAAGTTCAATCCATCGGGATCAGTTGTTGCATCTGGATCTCATGACAGGGAAATTTTCCTCTGGAATGTGCATGGGGAATGCAAGAACTTCATGGTTCTGAAAGGTCATAAGAATGCTATTTTAGATCTCCATTGGACTACAGATGGGACACAGATAGTTTCTGCCAGCCCTGATAAAACAGTGAGGGCATGGGATGTGGAAACTGGAAAGCAAATAAAAAAGATGGTAGAACATCTCTCATATGTTAATTCATGTTGTCCATCTCGAAGGGGACCTCCTCTTGTTGTTAGTGGCTCTGATGATGGAACTGCTAAATTATGGGATATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATTACAGCTGTCGGCTTCTCTGATGCATCAGATAAGATCTTCACTGGTGGTATTGATAATGATGTCAAGATTTGGGATTTGCGCAAAGGTGAAGTTATTATGACACTTCAAGGTCATCAAGATATGATTACTGGTATGCAATTGAGTCCTGATGGGTCCTACCTTCTTACAAATGGTATGGATTGCAAACTTTGCATTTGGGATATGCGTCCGTATGCTCCTCAAAATCGTTGTGTAAAAGTCTTGGAAGGGAACCAACACAACTTTGAAAAGAACTTGTTGAAGTGTAGTTGGTCTCCCGATGGAAGCAAGGTAACAGCTGGTAGTTCTGATCGAATGGTTTACATCTGGGATACTACTTCTCGCCGCATTTTGTATAAGCTTCCTGGTCACAATGGATCTGTTAATGAGTGTGTTTTTCATCCCAATGAGCCTATTATTGGATCTTGCAGTAGTGACAAGCAGATATATCTAGGGGAGTTATGA 1164 0.427 WGLYYYLQQRKRVFQAAACAFSELSAPHSTNKLSVSISGRVNMQVFPTEGENALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYTMKFNPSGSVVASGSHDREIFLWNVHGECKNFMVLKGHKNAILDLHWTTDGTQIVSASPDKTVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKVLEGNQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Pste5g01772 387 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 71 386 - -
Pste5g01772 387 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Pste5g01772 387 FunFam Small nuclear ribonucleoprotein U5 subunit 40 85 387 - -
Pste5g01772 387 Gene3D - 85 387 IPR015943 GO:0005515
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 89 125 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 227 252 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 303 344 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 257 294 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 173 211 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 131 168 IPR001680 GO:0005515
Pste5g01772 387 Pfam WD domain, G-beta repeat 350 384 IPR001680 GO:0005515
Pste5g01772 387 SUPERFAMILY WD40 repeat-like 90 384 IPR036322 GO:0005515
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 261 IPR001680 GO:0005515
Pste5g01772 387 CDD WD40 93 384 - -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 173 - -
Pste5g01772 387 ProSitePatterns Trp-Asp (WD) repeats signature. 155 169 IPR019775 -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 353 IPR001680 GO:0005515
Pste5g01772 387 ProSitePatterns Trp-Asp (WD) repeats signature. 112 126 IPR019775 -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 387 - -
Pste5g01772 387 SMART WD40_4 86 125 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 129 168 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 347 386 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 301 344 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 171 211 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 214 252 IPR001680 GO:0005515
Pste5g01772 387 SMART WD40_4 255 294 IPR001680 GO:0005515
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 126 IPR001680 GO:0005515
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Pste5g01772 387 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Pste5g01772 387 ProSitePatterns Trp-Asp (WD) repeats signature. 239 253 IPR019775 -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 387 IPR001680 GO:0005515
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 257 - -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 220 IPR001680 GO:0005515
Pste5g01772 387 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Pste5g01772 387 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Pste5g01772 387 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Pste5g01772 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 126 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01772 174 387 Miscellaneous Gene Families AT5G08390 26.512 5.29e-26 108