Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01735 GGCAGGCATAGTCGCCGGCTCAGGATTTGATAGAAAGAAAGAAAAGAAAAGGTTTCTTCTTCTTCTCTTATGACTCATTCTTCTTCGTTCCATTCCAAATCCGATTTCATCACTTCAATTTTCACATCCCTTTTCTTCTTCCTTTCAAGATCCCACTATCTACTCCATCGCCTTCTTCTCACTCTCTTTCTCAGATGGCTGCAAATTCTGGAAATATTGTGATCGCATTGGCTCAGTCTAGTTCACAGGTTCATGGGGACACTGATTCTGTCCAGATTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACATGATAACGAGATGGCAAGTGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTACCCAAAGCTCACGAAGGAGGCCTAGGGGAAGATTCAGGCACAACAGTTCAGAATCTGTTGAGAATAATTTCTCACAGCAGATCCCCCATGTCTTTAATACTGTGAGGCAACATCAATCACCTGCATCCTGGGAGGATGATCACCTTGTAGATAGTGACAACCCTGCTTGGTCATTGCAATATGCTAGTACACATACTACCCCCAGTGGATCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTCGACTTCTCTTTATGGTGAAAATGAATCAATTGCGAGTTTTAGACGGTACAGGGTTCCCCATGGTGAGACTGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCAGATATCTCTATGGATACTCAGAGTTTTGTTGGCACTGGAGTCTTCAATTTACCTGATGAAGGAGATGAGTTTGACAGTGACACTGACATAGATCCAATGCATGCTAGCCTCAGCCAATGGATCTCTTCAGATGAAGATGAAGAAGAAGAGGAGGAAGATGGGGAGGAGGAAGGGGAGGAGGAGGAGGATAGGGAATGGGCTTTAGCTGAGGCTGAGGAAGCTGAAGCTACATCCCGCCTTCAAATTTTTTTCACGTCTGGTCCAAGTGAGAACAGGGATCCCATTAATTGGGAACAAAGGCTTAATTCTACTGAATCTGAGGGAATGTTTAGCCGGATAATCAGGAACACCTGGCAACCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACGTTGGGGATTATCTTGATGCTAGAGGTTTTGAAGATCTGCTTGACCATCTTGCGGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCTCCTGACACTGAGGTAAATCAACTTCCCTGCTCTCATCTTTATCACATCAATTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAACAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCGAATAGAAGTCACAGATGATAGTTTCTCTGATGTTTCTGATGGAGAGGAGGTGAATGAAGAGAATGGTAGTAGTCAAGGTGGAATATGGCAAAGAGTTGTGAGCTCAGGTTCTACTGGGAATTCTTCTGCAATAAGAAGTGGAAGAGGTAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTCTTGTGGTTAGGTAATAACTCTCAGATTGAAGGAAGTAGACATCTGGGTGATCACTACTTATCCGGGCAAAATCAACATGCCATTCATGCTTATGCCTCTCCAAACCAGAGAGAGAGTAGAAGCAGAAGATGGTGGTGCCCGTTTTAAGTGCTTCTTGAATTGTTTATCAATAATGCCTCATGATGGCCACTTGGGATGAAATTTTTAACTGACTCATGGCGTGCCTTGTGTCATCACTAATTCAGGAAGACATGTACAGACGGTAGTTTGTAATATCTTAAGCTGTTTTCTTTTCTTTCCTAGTTTATGCTTCAAGTTCAAGGAAGGACCCAATGCCTGCTGAATATTTGATAATCTATTGTTGATGTTTTAGTGTGTTAAACCAAAATCAGTCTTTCGATTTACGGAAATTTGTTAGATTGGAAAGCACAATTATCACAAGTATCATTATAAGCTG 2202 0.4255 MAANSGNIVIALAQSSSQVHGDTDSVQIAVCSLCQKALSHDNEMASDLASSGVCGDCKFLLLEDFGNHTVTQSSRRRPRGRFRHNSSESVENNFSQQIPHVFNTVRQHQSPASWEDDHLVDSDNPAWSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNSTSLYGENESIASFRRYRVPHGETDSFSHSAYGGDSDISMDTQSFVGTGVFNLPDEGDEFDSDTDIDPMHASLSQWISSDEDEEEEEEDGEEEGEEEEDREWALAEAEEAEATSRLQIFFTSGPSENRDPINWEQRLNSTESEGMFSRIIRNTWQPFEDVDLPHGANVGDYLDARGFEDLLDHLAENDSSRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPDTEVNQLPCSHLYHINCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQRIEVTDDSFSDVSDGEEVNEENGSSQGGIWQRVVSSGSTGNSSAIRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSQIEGSRHLGDHYLSGQNQHAIHAYASPNQRESRSRRWWCPF 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01735 565 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 340 427 - -
Pste5g01735 565 SMART ring_2 380 420 IPR001841 -
Pste5g01735 565 CDD RING-H2_PA-TM-RING 379 421 - -
Pste5g01735 565 MobiDBLite consensus disorder prediction 232 266 - -
Pste5g01735 565 ProSiteProfiles Zinc finger RING-type profile. 380 421 IPR001841 -
Pste5g01735 565 Pfam Ring finger domain 380 421 IPR001841 -
Pste5g01735 565 MobiDBLite consensus disorder prediction 454 480 - -
Pste5g01735 565 SUPERFAMILY RING/U-box 363 427 - -
Pste5g01735 565 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 233 425 - -
Pste5g01735 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 427 IPR013083 -
Pste5g01735 565 MobiDBLite consensus disorder prediction 70 90 - -
Pste5g01735 565 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01735 Pste-Chr5 11042960 11046173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01735 23 565 C3H Transcription Factor Family AT5G01980 43.060 4.93e-119 359
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01735 5 11042960 11046173 Pste5g01735 5 11042960 11046173 ECH