LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01718	CAACGAACGAACAACACATTCTATAAGGACACAGTGTACGAATTGTTGAAAAGTGTGTGGACATGTACAGTGCGAGGGTGTGGTCTGGTACGAGGATTGCATGGTAAGGTATTCCAACGTGGCTTTCTTCTCGAGAGTTATAACTATGAAACTGGAACATTAAGATTGAACCAAGTCCAAACGGTTATCTGCCTAGAGGATATGATTGGATCTGCAATTCCCTCGGCTCGTTTGGGAACCCTAGGTGGACAAGTTTTGTATCCTATCTGCATTCTCCGCTTTGAATTGTTCCACTTTTATGATCTCATGCCCCTACACCTCCCACTGGGCAGTTTATTTGAAGGAAAAAAAAGAAGGGAAGAGGGAAATCTAAAAGAACTAAATCCACAGGCACAGCACCATCCACGGAGTGGTAGAACATTGACAGAAGGATGGATGGCTTTGAATTCCTTGAAGCTCATCTTCGTTTGCATCCTTGTTACCTTAAAACTCCTAAAGCACTGGCAACAGCACGTACGCAAAGAACCTGAGAAGCCTCCTCTCTTCCTTATCTTCAAACGCCAGCAGAAAGTTATTCTACAACAACACAAGGTGACATACCCTCTGGCCTGTGCAAAGAGTGCGTGGGGAAGGCAACCGAGAAACTATCCTCAGACCCAGAATGTTCCCTGTCGAAAGAGGGTGTTATGTGGTACGCTGAATGCACGGTTCGGTATTCGAACGAGGCATTCTTCTCCCTCCTGGAACTTGTTTAGCACCGTTGATATCACCTCCAACTCAACAACAAGCTTCATGGGTATGTTGTCCAGCACCATGAACCAAACAGCAGAAGCAGCAGCCAGTTCGGGTAAAAGGTTCTTCACAAAGGAAGCAAACTTGTCTGGTTCTCAGACCCTATACACTCTGGCTCAGTGCACACAAGACCTCACACCCCAAAACTGCACAACATGTCTTACTCAAGCAATAAGGTACCTTGTGCAGCTCAGTGATGGAAAGCAAGGAGGAAGACTTGGCTTTCCCAGTTGTAACGTTTGGTATGAATTATACCCTTTCTACGGTCTCGTCACGGATCACCCACCAACTAATACTCCTTCTCCTCCTCCATCCTCCATCCTCCATCCTCCATCCTCCATCCTCCATCCTCAGCAACAAACAATTTTTCAAACAAGAACAAGATTGGTAGAGGTGGATTTGGAGAAGTTTATAAGAGACTCAGGAAATTCTAAGCAAGGAGTAGAGGAGTTCAAAACCGAGATTCTATTAATAGCCAAGCTTCAACATAGAAATCTAGTTGCATTCATAGGATTTTGTCTTGATGAACAAGAGAAAATACTTATTTATGAACATGTTCCAAACAAAAGTTTAGACCACTACATATTTGATATTGAATTAAAAAAGGTGTTGAGTTGGTCTGAACGTCACAAAATCATAAGAGAAATTGCTCGAGGAATTCTATATTTACATAAACATTTTCGACTTAAAATTATATATCATGACCTTAAACCTAGCAATGTATTATTAGATAAAACCATGAATCCAAAAATTTTAGATTTTGGTCTTGCTAGAATTGTTGAAATAGATCAAGATAAAGGAAATACAAATAGAATTAATGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCTGAGAAATCTGATGTTTATAGTTTTGGAGTTATGGTTTGGAGATATTGGATGGATGGAACACCATTGAATACCTTAGACCCAAAATTAAAAGAAAATTATTCTAACATTGAAGTCATTAGATGCCTTAAAATAAGTTTATTATGCATACAAGATTACCCAGATGATAGACCTACAATGATGAATATTGTGTCATATCTTACTTATCACTCAATTGAGTTGCCTTCTCCACAAGAACCAAAATTTTTCTTGTACCATAGAGTAGATCCAATTGTTGCACATGCAACTTTAGGACAATTGGTTAACAATTCCATACCATCCTTTATCAATGATATGACT	1998	0.3974	QRTNNTFYKDTVYELLKSVWTCTVRGCGLVRGLHGKVFQRGFLLESYNYETGTLRLNQVQTVICLEDMIGSAIPSARLGTLGGQVLYPICILRFELFHFYDLMPLHLPLGSLFEGKKRREEGNLKELNPQAQHHPRSGRTLTEGWMALNSLKLIFVCILVTLKLLKHWQQHVRKEPEKPPLFLIFKRQQKVILQQHKVTYPLACAKSAWGRQPRNYPQTQNVPCRKRVLCGTLNARFGIRTRHSSPSWNLFSTVDITSNSTTSFMGMLSSTMNQTAEAAASSGKRFFTKEANLSGSQTLYTLAQCTQDLTPQNCTTCLTQAIRYLVQLSDGKQGGRLGFPSCNVWYELYPFYGLVTDHPPTNTPSPPPSSILHPPSSILHPQQQTIFQTRTRLVEVDLEKFIRDSGNSKQGVEEFKTEILLIAKLQHRNLVAFIGFCLDEQEKILIYEHVPNKSLDHYIFDIELKKVLSWSERHKIIREIARGILYLHKHFRLKIIYHDLKPSNVLLDKTMNPKILDFGLARIVEIDQDKGNTNRINGTYGYMSPEYAMFGQFSEKSDVYSFGVMVWRYWMDGTPLNTLDPKLKENYSNIEVIRCLKISLLCIQDYPDDRPTMMNIVSYLTYHSIELPSPQEPKFFLYHRVDPIVAHATLGQLVNNSIPSFINDMT	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01718	666	SMART	serkin_6	387	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g01718	666	ProSiteProfiles	Protein kinase domain profile.	372	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g01718	666	Pfam	Salt stress response/antifungal	260	349	IPR002902	-
	Pste5g01718	666	FunFam	Cysteine-rich receptor-like protein kinase 25	246	351	-	-
	Pste5g01718	666	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	405	642	-	-
	Pste5g01718	666	FunFam	Lectin-domain containing receptor kinase A4.3	450	567	-	-
	Pste5g01718	666	Gene3D	-	248	351	IPR038408	-
	Pste5g01718	666	Gene3D	Transferase(Phosphotransferase) domain 1	451	628	-	-
	Pste5g01718	666	ProSiteProfiles	Gnk2-homologous domain profile.	244	351	IPR002902	-
	Pste5g01718	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	495	507	IPR008271	GO:0004672\|GO:0006468
	Pste5g01718	666	Gene3D	Phosphorylase Kinase; domain 1	392	450	-	-
	Pste5g01718	666	Pfam	Protein kinase domain	400	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste5g01718	666	SUPERFAMILY	Protein kinase-like (PK-like)	401	649	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01718	Pste-Chr5	10901012	10909922	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01718	394	637	Receptor kinase-like Gene Family	AT3G45860	51.661	5.40e-88	287

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste5g01718		Pkinase	2.2e-35	CL0016