Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01677 ATGATAGCAATGAAGAGACAGAGAGATGATAAAGGGTCAGGGAGCTTGGATTTGGCAAAATGTCTTATGCTGTTCTCTTGTCCACAAGAAAGCATTAAGAGAGAAGAGAAAGGTTTTGGTTGTGTGGAATTTGAGTGCAAAACATGCAACAGAAAGTTCTCATCATTTCAAGCACTGGGAGGGCACAGGGCTAGTCACAAGAGGCAGAAGCTGGAGGAGGAAGAACTGAAAGAACAGGCAAAAAGTCTTGGATTGTGGAGCAAACACAAAAGGCACGAGTGTTCAATTTGTGGCATGGAATTCTCTCTGGGTCAGGCTCTGGGAGGTCACATGAGAAAACACAGAGGTGGCATCAACGAAGGCCTTCCTATTGTTCCTTCTATCAACCAAGTTATTGCCAAAACCCCTGTTCTCAAAAGGTCCAATAGCACCACGGTTATGTGCTTGGACTTGGAGTTACACCTCTAG 468 0.4487 MIAMKRQRDDKGSGSLDLAKCLMLFSCPQESIKREEKGFGCVEFECKTCNRKFSSFQALGGHRASHKRQKLEEEELKEQAKSLGLWSKHKRHECSICGMEFSLGQALGGHMRKHRGGINEGLPIVPSINQVIAKTPVLKRSNSTTVMCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01677 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Pste5g01677 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Pste5g01677 155 PANTHER ZINC FINGER PROTEIN ZAT5 18 153 - -
Pste5g01677 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 116 IPR013087 -
Pste5g01677 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Pste5g01677 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pste5g01677 155 Pfam C2H2-type zinc finger 44 69 - -
Pste5g01677 155 Pfam C2H2-type zinc finger 91 115 - -
Pste5g01677 155 Gene3D Classic Zinc Finger 41 114 - -
Pste5g01677 155 SMART c2h2final6 44 66 IPR013087 -
Pste5g01677 155 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01677 Pste-Chr5 10633328 10633795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01677 4 153 C2H2 Transcription Factor Family AT2G37430 43.125 1.15e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste5g01677 zf-C2H2_6 2.9e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01677 5 10633328 10633795 Pste4g02407 4 17137817 17138266 PCT