Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01673 GAGAGAGAGAAGCATGAAAACATAGTGAACACAATCGTGTGGGCTCGCACCTTTTTGTTCTCTCTCTTCGGTGTTTCAAAATTCCCATTCCATTTACTATTTCTCTTCTTTAAAACGTTGCTGCTTTCTTCTCATTCTTGTAACCCCACCCCATCCTTTTCAGTCATGGATAAATGGGAGTTAGTATGCAACAGTGGTGCCTCTTCACATCACTTGAACAATGTTGGTGAAGGTAGCAGTGCTAGGGACTTGAGTCTCTTCCCTTCTTCTCTTTGTGTGGGTTCCTCTGCTCCTCCTTTATCTATGGGTCATGGAAATGGGGTAGAGTGTTCAAAGCATGAGATGGGTCTTAGGATTTTGGGTGCCTCAGTTTTTCAGCCCCAGGAGAGAAGAGGGACAAAGAGAACCATTGATGAAGGGGATGGGAACTTTGGAGTTGAGAACAAAAACTTGTCTTTGAAACTTGGGGATGGAGTAGAAGCTAAAAGCTCTGCTGCAGGGAAAAATGGGTACACCAAGCTTTGTGCTAGAGGTCACTGGAGGCCAGCTGAAGATGAAAAACTTAAGGAGCTTGTTGGTCAGTATGGTCCTCAAAATTGGAACTTGATTGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAATCAGCTAGATCCGAGGATCAACAGGAGGTCCTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGACTGCCCACAAAATGTATGGTAACAAATGGGCCATGATTGCTAGACTCTTTCCTGGAAGGACGGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGTCTAGTAATGTTTATAGAAGGAGAAAACCTGTTAATAATGAAACCCTTCGAGAGGGTTTTAAACTGACTCTGTCTAACAATGCAGGGAGTGAGTCAACCATCTCAAGCACCGGTGGTGAATCTGCCTCAACTTGCACTAACCTATCCCTCACTCCCACTTCAGCCAAAACCCCCCCTCCTTTTGGTCTCTTTGACCAACCGGGTTCATTTCAGAATAACCAAGCCTTTGGATCATTAATGGGGCAATCTAGAGGGGATGTGAGTTTGAACAAGTGTTTTGGTGGTTGGAACGAGGGAAAGCTCAAGGTGGTGGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTTAATTTCTGAAGAGAGTGAAACTGTGGGAGATAAGATTAAAATGTCATTCATTGATTTTCTTGGAAGTTGGGGAATGTGGGTCTGTTATGAACTTATGAGTAGTTATGTGATTCAAAAACAGTATAATTATATTCAAACTCTTGGTTTTGGACTGTTCCTGCAACAGCAGAAGCAGAGCCTTGTTATCCTGTGCTACCTTTTGGCACTTTGT 1443 0.4338 EREKHENIVNTIVWARTFLFSLFGVSKFPFHLLFLFFKTLLLSSHSCNPTPSFSVMDKWELVCNSGASSHHLNNVGEGSSARDLSLFPSSLCVGSSAPPLSMGHGNGVECSKHEMGLRILGASVFQPQERRGTKRTIDEGDGNFGVENKNLSLKLGDGVEAKSSAAGKNGYTKLCARGHWRPAEDEKLKELVGQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLTAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQRESSNVYRRRKPVNNETLREGFKLTLSNNAGSESTISSTGGESASTCTNLSLTPTSAKTPPPFGLFDQPGSFQNNQAFGSLMGQSRGDVSLNKCFGGWNEGKLKVVVDQSNFSDANSEVSVSESVATNRSNVLISEESETVGDKIKMSFIDFLGSWGMWVCYELMSSYVIQKQYNYIQTLGFGLFLQQQKQSLVILCYLLALC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01673 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 223 IPR017930 -
Pste5g01673 481 SMART sant 176 225 IPR001005 -
Pste5g01673 481 SMART sant 228 276 IPR001005 -
Pste5g01673 481 Gene3D - 231 292 - -
Pste5g01673 481 CDD SANT 180 221 IPR001005 -
Pste5g01673 481 Pfam Myb-like DNA-binding domain 180 240 - -
Pste5g01673 481 Gene3D - 177 228 - -
Pste5g01673 481 FunFam MYB transcription factor 177 228 - -
Pste5g01673 481 ProSiteProfiles Myb-like domain profile. 224 274 IPR001005 -
Pste5g01673 481 CDD SANT 240 271 IPR001005 -
Pste5g01673 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 278 IPR017930 -
Pste5g01673 481 PANTHER MYB PROTEIN-RELATED 177 320 - -
Pste5g01673 481 SUPERFAMILY Homeodomain-like 177 270 IPR009057 -
Pste5g01673 481 ProSiteProfiles Myb-like domain profile. 177 223 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01673 Pste-Chr5 10620576 10622817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01673 167 345 MYB Transcription Factor Family AT5G17800 60.963 1.58e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste5g01673 Myb_DNA-bind_6 5.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01673 5 10620576 10622817 Pste5g01673 5 10620576 10622817 ECH