Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01672 GTGAGTGATGAAAATACAGAATCGCGTTTGCGAGTGAGGAATGAGTTTCTTGCAGGGACTTATTGATTCCTTCAACTCAATTTTCACACCCGATAACAATTATCACAACACCAATTCTCCGTCTTCTTCAACGGATCGAATGGAAGTTCCTCCTCCTTCGGTTTCGAACGAGCGCGTGGCTTACAAGCTCAAAGGCTACTACGATTTGGCCACACAGGAGATCGCCAAGGCCGTTAGGGCAGAGGAATGGGGCCTGATCGACGACGCGCTTCTTCACTACCGGAACGCGCATTCAATCCTCCTCGAAGCTAATTCAACTCCAGTTCCTTCCTACATCACTTCCAGTGAACAGCAGAAGGTGCAATCGTATCGTGAGAAGATATCCAAATGGCTGAGTCAGGTTTCGGAGAGATTGCAGACTCTAGCTAGACGAGCTGGTAGCTCATCTGCCAATCAGAGCACCTCAAAAGTTGCCCAAACTGCAGCAGTTCCCATTAAGCCATTGAGTACTAGAAAAAGTGTGTTACAAAAGCCTCCTCAAAGAACAGGCCAAGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGCGTCTGGTGTAAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGGCTTGAAAAGGCGAAGCGAGCTTTAATGGAGATGGTTATTTTGCCTACTAAGAGAAGAGATTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTGGCCAAAGCAGTGGCTTCAGAATCGCAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACGTCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTGTTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGCATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCGCAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTGAGAATTTCTTTACTGTCGTATACTGGAACCACACACTGCATCTCTACTTACTCTATTGGGTTTGCTGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGGAAGCTTCTGCTAAAACATAAACTCAAGGGTCAAGCGTTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAAGAGACAGAAGGATATTCCGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGCTGACATACTAACTGTAAGAGGACTGAGGTACGAGGATTTTAAGAAGGCAATGACTATCATTAGGCCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAACGAAGAATTTGGCTCTAATTAGGTGTACATAACTAAATTATACAAGAAGACATCACGGTGCTCTTCTTATTTTGTAAATGGCTATCCTAAAATCTTAACTAGCAGCTTGCCTTGAGGCCATTGTTTTAGAAACCTTCAAATGGTTGTCATTATTTATTTTAACTTTTTTTATATATATCTTTCTAAGATTACTATATTTAGTGACTGG 1726 0.4241 MSFLQGLIDSFNSIFTPDNNYHNTNSPSSSTDRMEVPPPSVSNERVAYKLKGYYDLATQEIAKAVRAEEWGLIDDALLHYRNAHSILLEANSTPVPSYITSSEQQKVQSYREKISKWLSQVSERLQTLARRAGSSSANQSTSKVAQTAAVPIKPLSTRKSVLQKPPQRTGQVNKVGSPKSSQASGVNYDDKLVEMINTAIVDRSPSVRWDDVAGLEKAKRALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVRISLLSYTGTTHCISTYSIGFAVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVRGLRYEDFKKAMTIIRPSLNKSKWEELERWNEEFGSN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01672 499 MobiDBLite consensus disorder prediction 160 185 - -
Pste5g01672 499 MobiDBLite consensus disorder prediction 130 149 - -
Pste5g01672 499 SMART AAA_5 242 379 IPR003593 GO:0016887
Pste5g01672 499 MobiDBLite consensus disorder prediction 18 40 - -
Pste5g01672 499 Gene3D - 42 132 - -
Pste5g01672 499 MobiDBLite consensus disorder prediction 158 185 - -
Pste5g01672 499 CDD MIT_spastin 50 128 - -
Pste5g01672 499 MobiDBLite consensus disorder prediction 130 147 - -
Pste5g01672 499 MobiDBLite consensus disorder prediction 18 37 - -
Pste5g01672 499 PANTHER AAA DOMAIN-CONTAINING 105 498 - -
Pste5g01672 499 Pfam AAA+ lid domain 424 455 IPR041569 -
Pste5g01672 499 Gene3D - 205 371 IPR027417 -
Pste5g01672 499 Gene3D - 400 477 - -
Pste5g01672 499 ProSitePatterns AAA-protein family signature. 348 367 IPR003960 GO:0005524|GO:0016887
Pste5g01672 499 SMART smart 50 127 IPR007330 -
Pste5g01672 499 Gene3D - 393 493 IPR027417 -
Pste5g01672 499 Pfam ATPase family associated with various cellular activities (AAA) 246 371 IPR003959 GO:0005524|GO:0016887
Pste5g01672 499 FunFam Spastin, putative 205 386 - -
Pste5g01672 499 FunFam AAA-type ATPase family protein 400 477 - -
Pste5g01672 499 FunFam AAA-type ATPase family protein 43 132 - -
Pste5g01672 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 496 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01672 Pste-Chr5 10603608 10609859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01672 205 480 Calmodulin-binding Proteins AT3G56690 37.544 2.28e-44 166