Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01618 TCAGAAATAATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATTGAGAACAAAATCAACAGGCAAGTTACTTTCTCGAAAAGAAGGAATGGTTTGGTGAAGAAAGCCAAAGAACTTTCAGTGCTGTGTGATGCTGAGGTTGCCCTTGTCATTTTTTCAAGTCGTGGGAAACTCTTCACCTTTCCAACTGATGGTGCAAGTATTATCAAAACCTATGAACGATACCGGAGCTACTCTTCACAAAGATATGACAATGTTGAACTTGATACCCAGGGCTGGTACCAAGAAATGTCAAAGCTAAAAGCAAAATATGAGTCTCTGCAAAGGACCCAAAGGCATTTGCTTGGGGAAGATCTTGGACCGCTGAGCATAAAAGAGCTGCAAAATCTTGAGAAGCAACTGGACAAAGCTTTATCACAAACTAGGCACAGAAAGACACAAATTATGATTGACCAAGTGGAAGAGCTTCGTAGAAAGGAGCGCCTTCTTGGAGACGTTAATAAGAACCTTAAACTTAAGGTTTTGTTCTATGACAGACTTGACGACCAACAATTCCAACATAACCTCGAACCTTACGGATTTAATGTCAAAGCTAATGAAAGTTTGTGGGGCTCTTCCTCTACTGCTGCTGAAGATGGTAGTTTTCTCTTGCAGCCTTCCCAAATCAACCCTATGGATTTACAAGCTGAAACTTTCTTGCAAATAGGGTACCCTGTTCATGCTGCGCCATCCATTGTAGCGGAGAACAGGGCCAGTGAGACTGCTAATTTTCAAGGATGGTTCCTTTGA 786 0.4237 SEIMGRGRVELKRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSSRGKLFTFPTDGASIIKTYERYRSYSSQRYDNVELDTQGWYQEMSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLDKALSQTRHRKTQIMIDQVEELRRKERLLGDVNKNLKLKVLFYDRLDDQQFQHNLEPYGFNVKANESLWGSSSTAAEDGSFLLQPSQINPMDLQAETFLQIGYPVHAAPSIVAENRASETANFQGWFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01618 261 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 CDD MADS_MEF2_like 5 81 IPR033896 GO:0000977|GO:0045944
Pste5g01618 261 SUPERFAMILY SRF-like 5 93 IPR036879 GO:0003677|GO:0046983
Pste5g01618 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 183 - -
Pste5g01618 261 FunFam MADS-box transcription factor MADS-MC 16 90 - -
Pste5g01618 261 ProSitePatterns MADS-box domain signature. 6 60 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 Coils Coil 96 116 - -
Pste5g01618 261 Pfam K-box region 88 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g01618 261 Coils Coil 123 143 - -
Pste5g01618 261 Gene3D - 16 86 IPR036879 GO:0003677|GO:0046983
Pste5g01618 261 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Pste5g01618 261 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01618 Pste-Chr5 10329515 10335661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01618 4 261 MADS-box Gene Family AT2G45650 52.788 2.85e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste5g01618 K-box 3.9e-30 No_clan