Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01608 CTTTTTCTGAGTTTCTCTGCACTTCTTGCTACCTCTCTTTTGTGTGTTTTCTTGCTTTTTCATTTTCCCAACTCTTAATTTTCTTCCCTTTTCTGTGCCTTATTCTCTCTTCACTGGTCAAAAGATTTCTGGGATTTTGTTAATTTGGTGCAAATCTGATTCCTTTTACAAACCCTCTTCATGGCTTGTTGAGGGCTACTAGAATTTCAAGTTGCTTTTTCTAGCTGCTTTTCTGGGCCTTCAAGTCTTGCTTGGAGAAGGCCCAATTGTGGCGGAGACCTCTCACTCAAGAAAGCATAGTTTTTGGGTTCATTCTACTTGGTGCTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCGCCTTCTCAAAGCGGCGTAATGGTTTGCTGAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCCCAAGAGGAAAACTTTATGAATTTGCTAGCTCCAGCATGCAGGATACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACCGTGAACAGATCCGATGAACAAAATATGCAGACTCATCCATGGTTTAGGTGTCGGTGGGACACGCTTTACGAATCAGAAGCTGCATATAAACCTACGGCCACTGGGGTCTTGGATACTCAAAATTTTGAGAAGTTTCCTGACATAATCATTCAACTTTATAATACTGAGGACTCAATGAACTTGTGTGATATGTTGCAGCATTTGAAACAAGAAACAGCACACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAACTACAACAGATAGAACAACAATTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGAGCAACTAAAAGAAAAGGAAAGAGCCCTATATGCTGAAAATACCAAGCTGTGTGAGCAGTATGGTATCCAGCCACAGCTAGCAACAAAGGATCCGAAAGAAAATCAACCCTACGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGATCATTGGACTACCTAGGTCTAGTTGAACATAATTTAATCCTTGCCTATAAGTATGAAATAAGGATAAGCCCAACTGTAATATATAAATATCACATGCTTCTAATACTATGAAAATAATATTGTAGCTTTATATTATATAAAGAATCATCAAATATGATTAGGT 1266 0.4021 MVRGKTQMRRIENATSRQVAFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQTHPWFRCRWDTLYESEAAYKPTATGVLDTQNFEKFPDIIIQLYNTEDSMNLCDMLQHLKQETAHLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKEQIEQLKEKERALYAENTKLCEQYGIQPQLATKDPKENQPYAESSPSSEVETELIIGLPRSS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01608 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 235 - -
Pste5g01608 265 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 ProSiteProfiles K-box domain profile. 143 233 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g01608 265 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 Coils Coil 177 226 - -
Pste5g01608 265 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Pste5g01608 265 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pste5g01608 265 FunFam MADS-box transcription factor 1 13 84 - -
Pste5g01608 265 Pfam K-box region 143 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste5g01608 265 MobiDBLite consensus disorder prediction 229 265 - -
Pste5g01608 265 Coils Coil 143 163 - -
Pste5g01608 265 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste5g01608 265 MobiDBLite consensus disorder prediction 235 254 - -
Pste5g01608 265 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01608 Pste-Chr5 10291674 10310143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01608 1 212 MADS-box Gene Family AT2G45660 56.604 2.75e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste5g01608 K-box 1.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01608 5 10291674 10310143 Pste6g02298 6 11051029 11058711 PCT