Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01607 AATAAACGCAGGAAATAATTATAGCGCACCAAGTCAGCATGGAATAGTCCCTGCGTCCCAATTTGACGGTGTCGGTGATTCACCAAAATCCTTCTTCCATTTACCTTCTCTTTCTCCCAATTCCCCCAAACCCGTTATCTCAAATTTGGTTCGTATTGAATTTCCAGATTCAGATTCACATTCACCGATGGCGGCGTCGCGGCGGCTCCGGGAGCTCCAATCCGAACCGGCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAACCCGCAATGGGCGTCGGTATCGTACGGCGTGTTCATGTGCCTGGAGTGCTCCGGGAAGCACAGAGGACTCGGCGTGCACATCTCCTTCGTGCGATCCGTGACAATGGACTCCTGGTCTGAAATCCAGATCAAGAAGATGGAAGCCGGTGGCAACGACAAACTCAACGCCTTCTTCTCCCAATACGGCATCCCCAAAGAGACTGACATCGTCGCCAAGTACAACTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGCCTCCCGTCCCTGGCGTGATCCCCCCGTCGTCAAGGAGCCTCTCCGCTCCAAGTCCAAACCTCCCCTCGCCGCCCCCTCCTCCGCCTGGGATAATTGGGACGCCGACGACGCCTTTGGATCCCCCAGGGATCTTCGCCGGAACCAATCCACCGGCGACGTCAAGGCCTTCGGCGCCCCCGGCAGCGTCACCCGCTCCAAGTCCACCGAGGATATTTACACCCGCGCCCAGTTGGAAGCCTCTGCTGCTAACAAGGAAGATTTCTTCTCCAGGAAGAGGATCGAGAATGAGTCTCGACCGGAGGGGATTCCTCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTAGCCCCGCCCCTTCCCAGAGGAATAATCAGCAAAACGATTATTTCTCCGTTGTTTCTCAGGGAATTGGTAAATTATCTTTGGCTGCTGCCTCTGCTGCTCAGTCTGCTGCCAATGTTGTTCAGGCCGGCACCAAAGAGATCACTGCCAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTTCACAAAAGGTAGAGGAATACACTAGAGATAACCCAAATTGGGAGTCTGATAACTGGCAACGAAATGAAAATGGTAAAAATGGTTCCTATCAGGAGTTCAATCAAGAGAACAAAGGACGGAATTCTTCCACTATGGAAGGACAACATTCTTCAGGTGGACAAACAAATACTTATCACTCAAGCTCTTGGGATGATTGGGGCCACAACGGTTCTAGGAAGGAAGAACCAGCTCCTAAGTCATCAGGTGGGCAATCTGGTACTTATAATTCGAGCTCTTGGGATGATTGGGACCAGGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCAGCTGCTCGTAGCAGTGATGATTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGGAGTGCATCTAATAATAAAGCTGTTGGTCATAATGAGAAGTCGGGTGCTGCCTGGACAGGAGGTGGCTTTCTCTAAGGTTTGACCTTATCTCTATCAACAGGATCAAAGTTTTGTCGGAAGTGACAGCAAAACAGTACCTCTTGGGCTGGTGGCATGCAAATCGAGCAGGGGTGTTGTTTAATATGATGGATGTGACCTGATTGTCAACTATACTATTGTTGGTCACTATTAAATTGGGCACATATGTGCTGGAAGAATGGTATTTTTTGAGGTTATCCTATTGTAATGCAAGTCTTTATTTTTCATTGTTTCTCCCATCCTCCTTGGTGTAATTGTTTTTATGTATTCTTTTGGGGACTTCTTCATGGTTGGAAACATAGTTTTATATGTACTAGTGTCCAAAGAAAGGGCATATTGCCCAAAATTTAAAATTACTTATACCTGGAAGTGTGATGAAATATTATTATGACACGA 2023 0.4849 MAASRRLRELQSEPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFFSQYGIPKETDIVAKYNSNAASVYRDRIQAIAASRPWRDPPVVKEPLRSKSKPPLAAPSSAWDNWDADDAFGSPRDLRRNQSTGDVKAFGAPGSVTRSKSTEDIYTRAQLEASAANKEDFFSRKRIENESRPEGIPPSQGGKYVGFGSSPAPSQRNNQQNDYFSVVSQGIGKLSLAAASAAQSAANVVQAGTKEITAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMRGVMAMASQKVEEYTRDNPNWESDNWQRNENGKNGSYQEFNQENKGRNSSTMEGQHSSGGQTNTYHSSSWDDWGHNGSRKEEPAPKSSGGQSGTYNSSSWDDWDQEDTRKKEPAKGSAARSSDDWAGWDNAKDDGFDDIYGSASNNKAVGHNEKSGAAWTGGGFL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01607 478 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Pste5g01607 478 MobiDBLite consensus disorder prediction 415 431 - -
Pste5g01607 478 MobiDBLite consensus disorder prediction 333 385 - -
Pste5g01607 478 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Pste5g01607 478 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 110 IPR001164 GO:0005096
Pste5g01607 478 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Pste5g01607 478 CDD ArfGap_ArfGap1 3 116 - -
Pste5g01607 478 Gene3D Arf GTPase activating protein 1 123 IPR038508 -
Pste5g01607 478 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pste5g01607 478 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pste5g01607 478 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pste5g01607 478 MobiDBLite consensus disorder prediction 204 240 - -
Pste5g01607 478 MobiDBLite consensus disorder prediction 122 184 - -
Pste5g01607 478 MobiDBLite consensus disorder prediction 329 478 - -
Pste5g01607 478 SUPERFAMILY ArfGap/RecO-like zinc finger 5 108 IPR037278 -
Pste5g01607 478 MobiDBLite consensus disorder prediction 398 414 - -
Pste5g01607 478 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 397 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01607 Pste-Chr5 10275554 10281195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01607 5 87 C2H2 Transcription Factor Family AT4G05330 47.619 1.54e-22 96.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01607 5 10275554 10281195 Pste5g01607 5 10275554 10281195 ECH
Pste5g01607 5 10275554 10281195 Pste4g01655 4 12409015 12413896 PCT