Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01600 GGGTTCATAAGATCTGTGTTGTTTGGCTCCATTTTCTTGTTCGATTTGTATTTGCAGGAAGCAGGTGTAGGAGAAGAGAGAGAAGGTTGTTCTCTCTCTCTCTCTTTTGTTTTTCTCTTTATTTTTTTGACAAAAATATTTGGTGGTATTTGAGGGTATTTAGGTTGTGGATTGAGTTGGGTTGTTGGGGTTGGAAGATTTCATAATTATGAATATGATGCGAAGGTTGAAAAGCATCGCTTCTGGGAGGACCTCTATTTCATCAGATCCTGGAGGGGACTGCACGACGAAAAGAGTGAAGTTTGATCAAGAGACTGAAGGAAAGGTCAATGATGAAACATATCCTAATGAACAACAAGTAGATGCATCTAACGGAAGTGTTAATTCCAACGTTCCTGCAGTGTCTACAAGTGAGAAGGCAGGTTACGATCAACTTCCAAAAGAATTAAATGAAATGAAAATTGGAGACGACAAAGGCAAAAACTATGAGAAGGATATTGAAGCAACTATTGTAAATGGTAATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCTGAACGTGTGGTTGGCACTGGTTCATTTGGTGTTGTTTATCAGGCTAAGTGCATTGAAACTGGAGAAGCAGTTGCAATTAAAAAAGTGTTGCAAGACAAGAGATATAAGAATAGGGAACTGCAGGTTATGCGTATGCTTGACCATACTAATGTTCTCAGACTAAAGCATTGTTTCTATTCAGCGGCAGAGAAAGATGAGCTGTACCTTAACCTTGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATATCCGAATGCACCAACATATGCCTATCATTTATGTACAAATGTATACGTACCAGATATGCCGGGGTTTAAATTATTTGCATCATGTGATTGGAGTCTGTCATCGAGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGACTCATCAGTTAAAAGTATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCTAACATATCATACATATGCTCGCGGTATTATAGGGCTCCGGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACATCCGATGTTTCCTGGAGAGAGTGGGGTGGATCAGTTGGTAGAGATCATTAAGATCTTGGGGACACCAACCAGAGAAGAAATAAAGTGCATGAATCCGAATTACACTGAATTTAAATTTCCACAAATAAAAGCACACCCATGGCATAAGGTTTTCCACAAGAAGATGCCTCCTGAAGCCGTGGATCTAGTGTCAAGGATGCTTCAATATTCACCTAATCTACGATGCACTGCTTTGGAAGCATGTGCACATCCCTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAACGGGCGACCACTGCCTCCATTGTTCGATTTCACTGCTCAAGAACTGGCTGGCGCACCGGATGAGTTGCGTCGACGTCTCATTCCTGAGCATTCAAGAAGTTGAATTAAACATTGGGTATTGGAAATGGGTTTTTTAAAATGAATAGATAACCACACCAGGAATGCTACCTACCATAAAGTCTAGGTATCTGCTGTCCACCCTGCAACAATCGTGACTATACAGCCCATAGGAACCTTAAAACCATGCAACCTCTTTATCAAAGACTGCAGGTGACGATGCCATGGATGAAGTAGGACTGCCTGGTGAATAGGGTTGCAACCATTTTTTAAGTAGTTTATGATTGATGTATGCCTCAATTGTAAAAGATAACGAGTTCTTACAATTCTTTCTTCATGTTTCATATCGTTCGTGCTGTTTGTTCCTTAAAGTGGGACTATGTGAAATCATATGTGTAGGCATCTTTTTTCGACCTGTTTATTTTCTATTTGTTAACTTGTAACAAAGAAAGTCTTCTCTATTTATTCTGCATGTGATGTTTGGTACTGCTAACTGCCAAATTAAATTAGAGTTCTCTAGTTTAAAGCTCCATGTGATGTTTCGTACTCCT 2093 0.4009 MNMMRRLKSIASGRTSISSDPGGDCTTKRVKFDQETEGKVNDETYPNEQQVDASNGSVNSNVPAVSTSEKAGYDQLPKELNEMKIGDDKGKNYEKDIEATIVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCIETGEAVAIKKVLQDKRYKNRELQVMRMLDHTNVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQMYTYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQTHQLKVCDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPPEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLREPNACLPNGRPLPPLFDFTAQELAGAPDELRRRLIPEHSRS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01600 459 ProSiteProfiles Protein kinase domain profile. 130 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g01600 459 CDD STKc_GSK3 125 417 IPR039192 -
Pste5g01600 459 MobiDBLite consensus disorder prediction 1 61 - -
Pste5g01600 459 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 96 458 - -
Pste5g01600 459 FunFam Shaggy-related protein kinase kappa 210 458 - -
Pste5g01600 459 Gene3D Transferase(Phosphotransferase) domain 1 210 458 - -
Pste5g01600 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Pste5g01600 459 MobiDBLite consensus disorder prediction 9 23 - -
Pste5g01600 459 MobiDBLite consensus disorder prediction 26 42 - -
Pste5g01600 459 SMART serkin_6 130 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g01600 459 MobiDBLite consensus disorder prediction 43 61 - -
Pste5g01600 459 ProSitePatterns Protein kinases ATP-binding region signature. 136 160 IPR017441 GO:0005524
Pste5g01600 459 Pfam Protein kinase domain 130 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste5g01600 459 FunFam Glycogen synthase kinase-3 beta 114 209 - -
Pste5g01600 459 Gene3D Phosphorylase Kinase; domain 1 115 209 - -
Pste5g01600 459 SUPERFAMILY Protein kinase-like (PK-like) 129 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01600 Pste-Chr5 10189946 10195515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01600 136 423 Core Cell Cycle Gene Families AT1G76540 35.017 1.26e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pste5g01600 Pkinase 1.2e-65 CL0016