Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01556 ATGCAGTGGGCCCCGCCAGCACCGTTTCCCAATTCCAATTTCAATCTTCTTTTGTTCTCCCTTTGGACCTATCACGTGTGGAGTTTACCTGATGTGTATCTATCTGGGATGCCCTCATGTGTTTGTGTTGAAGAATCTGTGAAGTGGGGTTGTTCTATATGCTGTTGTTCTGCTTCTGTTGTTATTTCTGCCTATAGCTTTTGGGGTTTAATCATTTGTGGAAGGCTAAGACGGGGTGCTGAATCTCGGATGATGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCCGATCCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCCAAATGCGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCAGTATGCCGTCTGCCATTGAAAAACTCTTCTGAAACGAAACATGTGACTGTGAGACCTGTGACATTTACCACGAACCAGTCCCTTGATGAGTCTCACACATCAGAAAGAAATGAAGATATCGAGAGACATGCAGAACCTACACCTATTGCAGCCAGTAACTCTTTACAACCAACTTCTGGAGAACAAGAAGCAAGGCAATGATATAAGAGGGGGCTAAAGGGGTTGTTCTGCTCAAAAAGAGGAGTGTAGAATTTCTGCTACTATAGAGGAATGCTTCTAATTATATAGATTTGATTCAAATTCTTTGTCTGTAAGCCTTCATATTCACTTGGTGATGTAAATATGTTTCCTTTTATAGCATATGCAGGCCTAGTTTTGGTGGGATTTTTGCATACCAAGTTGAAGTTCTTTTTTATCCATGATATCACTTACTCAAGCAAGAACACTGTCACTACTCCTGTTAATGTTTAACAGATTAAACAAA 997 0.4032 MQWAPPAPFPNSNFNLLLFSLWTYHVWSLPDVYLSGMPSCVCVEESVKWGCSICCCSASVVISAYSFWGLIICGRLRRGAESRMMYEIESRIDIEQPEHHVNDPESDPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVTVRPVTFTTNQSLDESHTSERNEDIERHAEPTPIAASNSLQPTSGEQEARQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01556 237 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pste5g01556 237 Pfam Ring finger domain 131 174 IPR001841 -
Pste5g01556 237 MobiDBLite consensus disorder prediction 202 216 - -
Pste5g01556 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 184 IPR013083 -
Pste5g01556 237 PANTHER OS11G0150450 PROTEIN 70 209 - -
Pste5g01556 237 SUPERFAMILY RING/U-box 122 181 - -
Pste5g01556 237 MobiDBLite consensus disorder prediction 194 237 - -
Pste5g01556 237 SMART ring_2 132 173 IPR001841 -
Pste5g01556 237 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01556 Pste-Chr5 9940833 9943317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g01556 121 204 C3H Transcription Factor Family AT4G10160 44.186 1.05e-18 80.1