LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g01503	ATGAATATGAATATGGATATGTTACACGGAAGTGTGGGGACGAGTTACAGACCCAGATTGGTGGGCCAATTAGGATGTTTCAATTTTAGAGAGAGAGGTTTTTCTTTTACTTTTCTTGGCAACTCCAGAAGTGTTTCTGCTTGTTGGAATAATTCAAGAACGGTTACTTGGGGTAAGGAGTGTCAGGTTTTTACTATGAAGAAAAGTTTGACTTGTAAGAATAATAACCTTTTTATGAGCTCTAGAATAATTTGGTCCAAGTGTCAGGGTAATGATTCTTTGTCTTATGTTAATGGCAATAGCCGGAATGTTGATTACTTGGAAGGTTCAGGTGAGGATGCAGGATTGGTGCCTGTTTCTAGTGCTGAACAGGATGCACATTTGGACGAAGGTCTTGAAATAGTGAGTGAAATAGTATTAGAGGAACAGAGTGTGGATGAACTGAAAGAACTGTTGCAGAAGGTCTTGAAGGAGCTAGAAGTAGCTCAAATAAATAGTACCATGTTTGAGGAGAAGGTTAAAAAAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCAGTTAATTCTTGGAGCGATGTTAATTCTACCCTTGACACCATTCAAGAAATAGTGAATGAAGAATTAATGGCCAAAGAAACTATCCAAAATGCATCAATGGGTCTTTCATTAGCCGAGGCTAGGCTTCAAGTAGCCATGGAATCTTTGGAGGCCGCAAAAGAAGTTCCTGATTCATCCCAAGGTTCTAATGAGGACAATGACAATAAAGACATGGTGGAAGAGGAGAAAGCTATTTTGGTTGCTCAAGAAGATGTAAAGGAATGCCAGGCTAATTTGGCCAGTTGTGAGGCAGAGTTGAGGCGCTTGCAAAATAAAAAGGAGGAGTTGCAGAAGGAAGTGAGCAAATTGCAGGAAATTGCAGAAAAGGCTCAACTCAATGCCGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCGGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACAAAACGTGTAAATGATGCACAAATTGCCTTACAACGAGCAGAAAAGTCTAATTCTAATTCAAATGCTGATACCATAGAAACTACACAAGCACAGGATGTCATACCTGTTCCTGAGGAGGAGAAACTAATTCAAGTTTTTTCAGGTGATGTCACTGTTGAAAGAGACAGAAATTTGGCCATTGATGATGAATCTTTGCTTTGCAAATTATCACCTGAAACACTATCTGATAAAACCAGCCAAATTTTGGAAGACAAAACGCACTCTGATTATTTAAGTGATAGTGAAAATGCTGTGCAAACAAAAAAGCAAGAAATTCAGAAAGATTTGACTAGAGAAAGTTCACCCTTTGCTCCCAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTTCGGCATCATTCTTCTCTTTTAGTGAAGATGGGACTGAGTTCACACCATCATCAGTCTTCCAGGGCCTTGTATTATCTGTACAGAAGCAGTTGCCCAAATTGATACTTGGTTTGTTATTGATGGGAGCAGGGGCTGCCTTCTATGCTAATAGAGTGGAGAAGAATTCTCAGCTGCTTCCACAGGCAGATGTTCTTATGACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAGACCTCTGGTTAGACATCTTCAGAAACTCCCAAAGAAAATCAAGAAAATCATTGCATCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCTTCCCTCTTTGACATGCTTTGGCTATTACTTGCAAGTGTTATATTTGTACCAATATTTCAAAAAATCCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCCGCTGGTATCTTAATTGGGCCCTATGGTCTCTCAATCATTCGTCATGTTCATGGGACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGGCAACTGCTATAACCGTTGGCTTGGTGGTTCATTATATCTGTGGCCAAGCTGGTCCTGCTGCTATTGTAATCGGGAATGGCCTAGCATTATCCTCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAAAGCACATCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTTTTTCAGGATCTGGCGGTTGTGGTCTTGCTGATACTCATACCTCTTATTTCTCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATAACTGCGATAATTGCAGGGGGACGATTGCTTCTTCGACCAATATACAAGCAAGTCGCAGAAAATCAAAATGCAGAAATTTTCTCAGCCAATACTCTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTAGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGCGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAATTTCCCAGTCATCACAGGCACACTAGCACTCTTAATATGTGGCAAGACTATGTTGGTCTCTTTGATGGGTAGAATGTTTGGGATTTCCCTCATTTCTGCCATCAGAGCTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAACTGTCATCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATAACACCATGGTTAGCTGCAGGAGGCCAGCTGATTGCATCCCGTTTCGAGCAAAATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCCCAACTTCTTTCTGAGCGTCTTATTCCGTTTGTCGCACTAGATGTAAGAAGCGATAGAGTGGCGGTTGGTCGAGCGCTCGGTCTCCCTGTGTACTTTGGAGATGCTGGTAGTAGAGAGGTCTTACATAAGATTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTCTTGATACGCCTGGTGCAAATTACCGAACAGTTTGGGCTCTGAGCAAGTATTTTCCAAATGTCAAGACCTTTGTCCGTGCCCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTTCTCAGGCCAAACTTCCCACATCGGAGATTGCAGCAACCATAAATGAATTCAGAACTCGACATCTAGCTGAGCTCACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGTTTTAACAGAATTATGAGCAAACCCAAATCCCAATCCACAGAATTGTTGGATGAGACCCCAGTCTCTGAAGGGACACTGGCAATATAAAGATTTCCCATATATACAAAGTAGAAGGCAGAAGAAAATCAGAGTTAGGGAAAAATTCATTGTCAAAAACTGTATAGCAGATTATTAGTTCCATTGTTATGTACAGAAATATAGCTGGATAGAACGGGATGCAATAGTGTTATTTTCTTTTTTCGGAAAATTTTGGTTTCCGTCATCTCAAGTTCCGGTTAAGGATGATATCTGTGTTGCTGTAGTTATAATGTGCCATTGGCATTGTTTTCATTTGCCTTGGCAGGTTTTTTATTGTCATAATCATATAAAAGACACAGGCTAGTATTATTATTAGCTTCACTTGGATGTGCATCCTCTTCACCTCAACGTGTCCGTATACAATACCCTGTAGTAAACAAGTGAATGCCCTGGAAAAGTAGGTCAACTCCTGCAGGTTGATAATTAATGATCCTCGAACTCATCCTACACATCTTACTCTTTATATATTGGAAAGTTGCTCTTGTCAGTATATC	4031	0.4138	MNMNMDMLHGSVGTSYRPRLVGQLGCFNFRERGFSFTFLGNSRSVSACWNNSRTVTWGKECQVFTMKKSLTCKNNNLFMSSRIIWSKCQGNDSLSYVNGNSRNVDYLEGSGEDAGLVPVSSAEQDAHLDEGLEIVSEIVLEEQSVDELKELLQKVLKELEVAQINSTMFEEKVKKISETAISLHDEAVNSWSDVNSTLDTIQEIVNEELMAKETIQNASMGLSLAEARLQVAMESLEAAKEVPDSSQGSNEDNDNKDMVEEEKAILVAQEDVKECQANLASCEAELRRLQNKKEELQKEVSKLQEIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATKRVNDAQIALQRAEKSNSNSNADTIETTQAQDVIPVPEEEKLIQVFSGDVTVERDRNLAIDDESLLCKLSPETLSDKTSQILEDKTHSDYLSDSENAVQTKKQEIQKDLTRESSPFAPKALLKKSSRFFSASFFSFSEDGTEFTPSSVFQGLVLSVQKQLPKLILGLLLMGAGAAFYANRVEKNSQLLPQADVLMTSVEEVSSSARPLVRHLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAITVGLVVHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGTLALLICGKTMLVSLMGRMFGISLISAIRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALGLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLSQAKLPTSEIAATINEFRTRHLAELTELCEASGSSLGYGFNRIMSKPKSQSTELLDETPVSEGTLAI	1181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g01503	1181	ProSiteProfiles	RCK N-terminal domain profile.	985	1107	IPR003148	GO:0006813
	Pste5g01503	1181	Gene3D	-	981	1145	-	-
	Pste5g01503	1181	Pfam	TrkA-N domain	986	1099	IPR003148	GO:0006813
	Pste5g01503	1181	Coils	Coil	222	242	-	-
	Pste5g01503	1181	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	179	1167	-	-
	Pste5g01503	1181	NCBIfam	monovalent cation:proton antiporter-2 (CPA2) family protein	584	864	IPR004771	GO:0006812\|GO:0008324\|GO:0016020
	Pste5g01503	1181	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	982	1123	IPR036291	-
	Pste5g01503	1181	Coils	Coil	265	320	-	-
	Pste5g01503	1181	FunFam	K(+) efflux antiporter 2 chloroplastic	981	1145	-	-
	Pste5g01503	1181	Coils	Coil	138	165	-	-
	Pste5g01503	1181	Pfam	Sodium/hydrogen exchanger family	583	953	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Pste5g01503	1181	Gene3D	-	573	961	IPR038770	-
	Pste5g01503	1181	FunFam	K(+) efflux antiporter 2 chloroplastic	573	959	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g01503	Pste-Chr5	9597778	9619793	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g01503	70	1181	Inorganic Solute Cotransporters	AT4G00630	70.432	0.0	1424

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g01503	5	9597778	9619793	Pste5g01503	5	9597778	9619793	ECH
	Pste5g01503	5	9597778	9619793	Pste6g02158	6	10220747	10232358	PCT