Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g01497 ATGTCATTCACTGGAACCCTTGATAAATGCAAGGCTTGTGATAAAACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGGTGCAGTCACTGCAAGGGATACCTTACGATGAGCACCTACTCCTCAATGGATGGCGTCCTCTATTGCAAGCCACACTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGAAAAGCAAAATGAGCTGAATAAGGTCCCCAACCGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTACAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAAAACTGCTTTAGGTGTGCTCATGCAGGATGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTGTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAAGCTGCTGCAAACAAGAAGAATGCCACACCCCCTTCTGAACCAGTTGAAGAAGGAGAAGAAGAAGAGCCACCAAAGTCACAAGAATCTAATAATCCTGAGGAACAGACAGAAGAAAAGTCAAATGAAGCATAG 651 0.4378 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKQNELNKVPNRLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANKKNATPPSEPVEEGEEEEPPKSQESNNPEEQTEEKSNEA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g01497 216 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pste5g01497 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pste5g01497 216 FunFam LIM domain and actin-binding 1 4 74 - -
Pste5g01497 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pste5g01497 216 Gene3D Cysteine Rich Protein 101 168 - -
Pste5g01497 216 Gene3D Cysteine Rich Protein 5 72 - -
Pste5g01497 216 MobiDBLite consensus disorder prediction 197 216 - -
Pste5g01497 216 FunFam LIM domain and actin-binding 1 100 170 - -
Pste5g01497 216 Pfam LIM domain 106 161 IPR001781 -
Pste5g01497 216 Pfam LIM domain 10 65 IPR001781 -
Pste5g01497 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Pste5g01497 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Pste5g01497 216 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Pste5g01497 216 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pste5g01497 216 MobiDBLite consensus disorder prediction 175 216 - -
Pste5g01497 216 CDD LIM1_SF3 6 68 - -
Pste5g01497 216 PANTHER OS06G0237300 PROTEIN 6 87 - -
Pste5g01497 216 SMART lim_4 105 157 IPR001781 -
Pste5g01497 216 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g01497 Pste-Chr5 9576729 9578467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pste5g01497 LIM 1.6e-09 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01497 5 9576729 9578467 Pste5g01497 5 9576729 9578467 ECH
Pste5g01497 5 9576729 9578467 Pste6g02157 6 10214838 10216936 PCT